Name: Streptomyces naganishii H-4871
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15419

Type strain:

Species: Streptomyces naganishii

Strain Designation: H-4871

Culture col. no.: DSM 40282, ATCC 23939, CBS 923.68, IFO 12892, ISP 5282, NBRC 12892, RIA 1196, JCM 4190, BCRC 15130, JCM 4654, NRRL B-1816

Strain history: KCC S-0190 <-- H. Yonehara <-- T. Yamaguchi H-4871.

NCBI tax ID(s): 1306179 (strain), 285447 (species)

SI-ID 389333

ATCC 23939, IFO 12892, DSM 40282, JCM 4190, NRRL B-1816, JCM 4654, CBS 923.68, NBRC 12892, BCRC 15130, CCRC 15130

Other strains from Streptomyces naganishii

S. naganishii ST033340(HKI),

Section

Streptomyces naganishii H-4871 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces naganishii**
	Full Scientific Name (LPSN)	Streptomyces naganishii Yamaguchi and Saburi 1955 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.719

[Ref.: #69480]	Motility	no Confidence in %92.222

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9433]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9433]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %98.804

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9433]	Sample type/isolated from	soil
[Ref.: #9433]	Country	Japan
[Ref.: #9433]	Country ISO 3 Code	JPN
[Ref.: #9433]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces naganishii gene for 16S rRNA, partial sequence, strain: NBRC 12892	AB184224	1472	ENA	1306179 tax ID	*
[Ref.: #20218]	Streptomyces naganishii strain NRRL B-1816T 16S ribosomal RNA gene, partial sequence	DQ442529	1501	ENA	1306179 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces naganishii JCM 4654	GCA_014650575	contig	GenBank	1306179 tax ID	*
[Ref.: #66792]	Streptomyces naganishii JCM 4654	GCA_001315425	contig	GenBank	1306179 tax ID	*
[Ref.: #66792]	Streptomyces naganishii JCM 4654	1306179.6	wgs	PATRIC	1306179 tax ID	*
[Ref.: #66792]	Streptomyces naganishii JCM 4654	1306179.5	wgs	PATRIC	1306179 tax ID	*
[Ref.: #66792]	Streptomyces naganishii JCM 4654	2734481987	draft	JGI IMG/M	1306179 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces naganishii JCM 4654 PATRIC: 1306179.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces naganishii JCM 4654 PATRIC: 1306179.6
[Ref.: #69480]	motile	no	94.578	no
[Ref.: #69480]	gram-positive	yes	89.971	no
[Ref.: #69480]	anaerobic	no	98.56	no
[Ref.: #69480]	halophile	no	94.936	no
[Ref.: #69480]	spore-forming	yes	94.9	no
[Ref.: #69480]	thermophile	no	98.281	yes
[Ref.: #69480]	glucose-util	yes	87.976	no
[Ref.: #69480]	aerobic	yes	85.42	no
[Ref.: #69480]	flagellated	no	98.34	no
[Ref.: #69480]	glucose-ferment	no	89.882	no

Availability in culture collections External links

[Ref.: #9433]

Culture collection no.

DSM 40282, ATCC 23939, CBS 923.68, IFO 12892, ISP 5282, NBRC 12892, RIA 1196, JCM 4190, BCRC 15130, JCM 4654, NRRL B-1816

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SI-ID 389333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces triticagri sp. nov. and Streptomyces triticirhizae sp. nov., two novel Actinobacteria isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Han C, Yu Z, Zhao J, Shi H, Hu J, Yu B, Song J, Shen Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003727	2020	*
Phylogeny	Streptomyces boninensis sp. nov., isolated from soil from a limestone cave in the Ogasawara Islands.	Take A, Inahashi Y, Omura S, Takahashi Y, Matsumoto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002753	2018	*

References

#9433

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40282

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84507

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389333.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces naganishii JCM 4654

Streptomyces naganishii JCM 4654

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