Name: Sphingobacterium composti T5-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 154125

Type strain:

Species: Sphingobacterium composti

Strain Designation: T5-12

Culture col. no.: CCUG 52467, KCTC 12578, LMG 23401

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363260 (species)

SI-ID 289681

LMG 23401, KCTC 12578, VTT E-072691, CCUG 52467

Section

Sphingobacterium composti T5-12 is an aerobe, rod-shaped bacterium that was isolated from Soil,ginseng field.

rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium composti**
	Full Scientific Name (LPSN)	Sphingobacterium composti Ten et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.037

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #59558]			growth	30-42 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #67771]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59558]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #59558]	Sample type/isolated from	Soil,ginseng field
[Ref.: #59558]	Geographic location (country and/or sea, region)	Pocheon
[Ref.: #59558]	Country	Republic of Korea
[Ref.: #59558]	Country ISO 3 Code	KOR
[Ref.: #59558]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From compost composed of cow dung and rice straw
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB244764 (>99% sequence identity) for Sphingobacterium from Microbeatlas

Aquatic Samples	26
Soil Samples	46
Animal Samples	188
Plant Samples	5
Total Samples	265

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 gene for 16S rRNA, partial sequence	AB244764	1433	ENA	363260 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 KCTC 12578	GCA_009829075	scaffold	GenBank	363260 tax ID	*
[Ref.: #66792]	Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 strain KCTC 12578	363260.3	wgs	PATRIC	363260 tax ID	*
[Ref.: #66792]	Sphingobacterium composti KCTC 12578	2898745591	draft	JGI IMG/M	363260 tax ID	*

[Ref.: #67771]

GC-content

36.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 KCTC 12578 NCBI: GCA_009829075.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 KCTC 12578 NCBI: GCA_009829075.1
[Ref.: #69480]	motile	no	89.334	yes
[Ref.: #69480]	flagellated	no	96.898	no
[Ref.: #69480]	gram-positive	no	98.139	yes
[Ref.: #69480]	anaerobic	no	99.091	yes
[Ref.: #69480]	aerobic	yes	88.465	no
[Ref.: #69480]	halophile	no	95.754	no
[Ref.: #69480]	spore-forming	no	95.565	yes
[Ref.: #69480]	glucose-util	yes	91.017	no
[Ref.: #69480]	thermophile	no	99.486	yes
[Ref.: #69480]	glucose-ferment	no	89.848	no

Availability in culture collections External links

[Ref.: #59558]

Culture collection no.

CCUG 52467, KCTC 12578, LMG 23401

[Ref.: #107823]

SI-ID 289681

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium bovistauri sp. nov., Isolated from the Faeces of Bos Taurus.	Wang Q, Fang ZQ, Zhang CL, Shen JQ, Lai JD, Han XL, Lu T	Curr Microbiol	10.1007/s00284-022-02763-2	2022	*
Phylogeny	Sphingobacterium hungaricum sp. nov. a novel species on the borderline of the genus Sphingobacterium.	Toth A, Mate R, Kutasi J, Toth E, Boka K, Tancsics A, Nagy I, Kovacs G, Kosztik J, Bata-Vidacs I, Kukolya J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005105	2021	*
Phylogeny	Sphingobacterium cavernae sp. nov., a novel bacterium isolated from soil sampled at Tiandong Cave.	Zhou XK, Huang Y, Li M, Zhang XF, Wei YQ, Cha QY, Zhang TK, Wang XJ, Liu JJ, Liu ZY, Qin SC, Mo MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004044	2020	*
Phylogeny	Sphingobacterium bovisgrunnientis sp. nov., isolated from yak milk.	Kaur M, Singh H, Sharma S, Mishra S, Tanuku NRS, Pinnaka AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002562	2018	*
Phylogeny	Sphingobacterium rhinocerotis sp. nov., isolated from the faeces of Rhinoceros unicornis.	Li GD, Chen X, Li QY, Xu FJ, Qiu SM, Jiang Y, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-015-0563-7	2015	*
Phylogeny	Sphingobacterium nematocida sp. nov., a nematicidal endophytic bacterium isolated from tobacco.	Liu J, Yang LL, Xu CK, Xi JQ, Yang FX, Zhou F, Zhou Y, Mo MH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.033670-0	2011	*
Phylogeny	Sphingobacterium anhuiense sp. nov., isolated from forest soil.	Wei W, Zhou Y, Wang X, Huang X, Lai R	Int J Syst Evol Microbiol	10.1099/ijs.0.65864-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#59558 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52467

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#107823

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289681.1 )

* These data were automatically processed and therefore are not curated

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Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 KCTC 12578

Sphingobacterium composti Ten et al. 2007 non Yoo et al. 2007 KCTC 12578

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