Streptomyces mirabilis (DSM 40553, ATCC 27447, CBS 751.72)

Name: Streptomyces mirabilis (DSM 40553, ATCC 27447, CBS 751.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15412

Type strain

Strain Designation AC-680 (= strain Ankermann)

Culture col. no. DSM 40553 ATCC 27447 CBS 751.72 IFO 13450 ISP 5553 10 more

NCBI tax ID(s) 68239

Special Collections DSMZ JCM

History DSMZ <- E.B. Shirling, ISP <- H.D. Tresner, Lederle Labs., AC-680 (= strain Ankermann) JCM <-- KCC S-0551 <-- NRRL B-2400 <-- Lederle Labs.; AC-860.

Links

Streptomyces mirabilis AC-680 is a bacterium that produces antibiotic compounds.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297061

ATCC 27447,IFO 13450,DSM 40553,JCM 4551,JCM 4791,NRRL B-2400,CBS 751.72,CBS 489.62,NBRC 13450,BCRC 15200,CCRC 15200,CGMCC 4.1988

@ref 20215

Last LPSN update 2026-05-29 08:28:32

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces mirabilis

Full scientific name Streptomyces mirabilis Ruschmann 1952 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces mirabilis** (2)	Type strain
153128	S. mirabilis CCUG 48542
176626	S. mirabilis DSM 41010, IMRU 3042

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.245
125439		93.197
125438	positive	90.214

Multimedia

@ref:	9636
multimedia content:	DSM_40553.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40553.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9636	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9636	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9636	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.631
125439	obligate aerobe	99.091

Spore formation

@ref	Spore formation	Confidence
125438		91.071

Compound production

@ref	Compound
9636	miramycin
67770	Miramycin

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AF112180 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	120
Soil Samples	1454
Animal Samples	56
Plant Samples	850
Total Samples	2480

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9636	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465027v1 assembly for Streptomyces mirabilis JCM 4551	scaffold	GCA_014650275	68239.8	8113600745	68239	57.1

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces mirabilis strain ATCC27447 16S ribosomal RNA gene, partial sequence	AF112180	1466	68239
20218	Streptomyces mirabilis strain DSM 40553 16S ribosomal RNA gene, partial sequence	AY999730	1448	68239
20218	Streptomyces mirabilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4791	D44366	120	68239
20218	Streptomyces mirabilis gene for 16S rRNA, partial sequence, strain: NBRC 13450	AB184412	1472	68239
124043	Streptomyces mirabilis strain JCM 4551 16S ribosomal RNA gene, partial sequence.	MT760571	1406	68239

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1465027v1 assembly for Streptomyces mirabilis JCM 4551
NCBI: GCA_014650275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.25	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.09	no
125439	motility	BacteriaNetⓘ	no	93.20	no
125439	spore_formation	BacteriaNetⓘ	yes	87.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces mirabilis JCM 4551
NCBI: GCA_014650275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.21	no
125438	anaerobic	anaerobicⓘ	no	96.40	no
125438	aerobic	aerobicⓘ	yes	92.63	no
125438	spore-forming	spore-formingⓘ	yes	91.07	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Structural mass spectrometry: rapid methods for separation and analysis of peptide natural products.	Goodwin CR, Fenn LS, Derewacz DK, Bachmann BO, McLean JA.	J Nat Prod	10.1021/np200457r	2012
Enzymology	Actinobacteria associated with the marine sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and their culturability.	Khan ST, Takagi M, Shin-ya K.	Microbes Environ	10.1264/jsme2.me11270	2012
Genetics	The complete genome sequence of the cluster BE1 Streptomyces Bacteriophage Riptide includes genes encoding ribosome-associated proteins.	Sagalovsky A, Camarushi A, Prabakaran JD, Shahzad A, Nguyen N, Mirahmadian D, Ibino MA, Mutasim A, Okusanya E, Zaki C, Kardaniyazd K, Ramsey H, Kargbo J, Fuamazeh B, Mahmood D, Anderson J, Adesola E, Fom Kembou LE, Hindle C, Kontchou K, Najib A, Hernandez G, 2024 UMBC Phage Hunters, Frazier E, Caruso SM.	Microbiol Resour Announc	10.1128/mra.00776-25	2025
Genetics	Genome sequence of bacteriophage GiJojo, isolated using Streptomyces mirabilis in Catonsville, Maryland.	Badiola MLP, Befano KD, Berger ML, Blanco CR, Ghunney N, Lee JG, Myat LP, Nguyen JK, Ober EM, Press-Porter KM, She BT, Watkins JS, 2023 UMBC Phage Hunters, Caruso SM.	Microbiol Resour Announc	10.1128/mra.00584-24	2024
Genetics	Complete genome and characteristics of cluster BC bacteriophage SoJo, isolated using Streptomyces mirabilis NRRL B-2400 in Columbia, MD.	Kumar SV, Schaffer N, Bharmal Z, Mood Q, 2022 UMBC Phage Hunters, Erill I, Caruso SM.	Microbiol Resour Announc	10.1128/mra.00068-24	2024
	Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS.	Blocker D, Koert M, Mattson C, Patel H, Patel P, Patel R, Paudel H, 2017 UMBC Phage Hunters, Erill I, Caruso SM.	Microbiol Resour Announc	10.1128/mra.00993-18	2018
	Simultaneous entry as an adaptation to virulence in a novel satellite-helper system infecting Streptomyces species.	deCarvalho T, Mascolo E, Caruso SM, Lopez-Perez J, Weston-Hafer K, Shaffer C, Erill I.	ISME J	10.1038/s41396-023-01548-0	2023
Phylogeny	A Novel Genus of Actinobacterial Tectiviridae.	Caruso SM, deCarvalho TN, Huynh A, Morcos G, Kuo N, Parsa S, Erill I.	Viruses	10.3390/v11121134	2019
	Selection and characterization of microorganisms utilizing thaxtomin A, a phytotoxin produced by streptomyces scabies	Doumbou CL, Akimov V V, Beaulieu C	Appl Environ Microbiol	10.1128/AEM.64.11.4313-4316.1998	1998
Phylogeny	Steptomyces fagopyri sp. nov., a novel actinomycete isolated from rhizospheric soil of Fagopyrum dibotrys.	Guo Y, Tang X, Hu S, Li K, Zhou M, Jian G	Int J Syst Evol Microbiol	10.1099/ijsem.0.004555	2020
Phylogeny	Streptomyces lutosisoli sp. nov., a novel actinomycete isolated from muddy soil.	Shen Y, Sun T, Jiang S, Mu S, Li D, Guo X, Zhang J, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1129-2	2018
Phylogeny	Streptomyces erringtonii sp. nov. and Streptomyces kaempferi sp. nov., isolated from a hay meadow soil.	Santhanam R, Rong X, Huang Y, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9788-x	2012
Phylogeny	Streptomyces roseoalbus sp. nov., an actinomycete isolated from soil in Yunnan, China.	Xu LH, Jiang Y, Li WJ, Wen ML, Li MG, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-004-3720-y	2005

References

#9636	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40553
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces mirabilis (DSM 40553, ATCC 27447, CBS 751.72)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014650275

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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