Streptomyces minutiscleroticus (DSM 40301, ATCC 17757, CBS 662.72)

Name: Streptomyces minutiscleroticus (DSM 40301, ATCC 17757, CBS 662.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15411

Type strain

Culture col. no. DSM 40301 ATCC 17757 CBS 662.72 HACC 147 IFO 13361 18 more

NCBI tax ID(s) 68238

Special Collections DSMZ JCM KCTC Wink compendium

History DSMZ <- E.B. Shirling, ISP <- M.J. Thirumalachar, HACC JCM <-- KCC A-0102 <-- RIA 885 <-- HACC 147.

Links

Streptomyces minutiscleroticus DSM 40301 is a bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36721

PCM 2304,ATCC 17757,ATCC 19346,IFO 13361,DSM 40301,JCM 3102,CCRC 12544,IFO 13000,JCM 4790,NCIMB 10996,NRRL B-12202,CBS 231.65,CBS 662.72,KCTC 9123,IMI 112786,NBRC 13000,NBRC 13361,LMG 20062,BCRC 12544,UAMH 6128,NCIB 10996,CGMCC 4.1981

@ref 20215

Last LPSN update 2026-05-29 08:28:32

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces minutiscleroticus

Full scientific name Streptomyces minutiscleroticus (Thirumalachar 1965) Pridham 1970 (Approved Lists 1980)

Synonyms (1)

Chainia minutisclerotica

BacDive ID	Other strains from **Streptomyces minutiscleroticus** (1)	Type strain
15410	S. minutiscleroticus DSM 40270, AS 4.1071, ATCC 19347, CBS 658.72, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	97.409

Multimedia

@ref:	9443
multimedia content:	DSM_40301.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40301.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9443	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9443	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9443	positive	growth	28
18580	positive	optimum	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.504

Compound production

@ref	Compound
9443	aburamycin
9443	antibiotic M5-18903

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18580	NaCl	positive	maximum	2.5 %

Observation

67770

Observationquinones: MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18580	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18580	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18580	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18580	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18580	29864 ChEBI	mannitol	+
18580	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18580	16634 ChEBI	raffinose	-
18580	26546 ChEBI	rhamnose	+
18580	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18580	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
67770		aburamycin A
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18580	+	-	-	-	-	-	-	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoil

Taxonmaps

69479

Global distribution of 16S sequence EF178696 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	0
Soil Samples	12
Animal Samples	16
Plant Samples	0
Total Samples	28

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9443	1	Risk group (German classification) According to TRBA 466
18580	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465087v1 assembly for Streptomyces minutiscleroticus JCM 4790	scaffold	GCA_014650875	68238.12	8113676473	68238	16.7

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces minutiscleroticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4790	D44365	121	68238
20218	Streptomyces minutiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13000	AB184249	1476	68238
20218	Streptomyces minutiscleroticus gene for 16S rRNA, partial sequence, strain: NBRC 13361	AB184351	1475	68238
20218	Streptomyces minutiscleroticus strain NRRL B-12202 16S ribosomal RNA gene, partial sequence	EF178696	1480	68238
124043	Streptomyces minutiscleroticus strain JCM 4790 16S ribosomal RNA gene, partial sequence.	MT760614	1350	68238

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1465087v1 assembly for Streptomyces minutiscleroticus JCM 4790
NCBI: GCA_014650875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.50	no
125439	motility	BacteriaNetⓘ	no	86.66	no
125439	gram_stain	BacteriaNetⓘ	positive	97.41	no
125439	spore_formation	BacteriaNetⓘ	yes	72.53	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces minutiscleroticus JCM 4790
NCBI: GCA_014650875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	73.84	no
125438	anaerobic	anaerobicⓘ	no	97.03	no
125438	aerobic	aerobicⓘ	yes	85.91	no
125438	spore-forming	spore-formingⓘ	yes	86.46	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	83.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bionanofactory for green synthesis of collagen nanoparticles, characterization, optimization, in-vitro and in-vivo anticancer activities.	El-Sawah AA, El-Naggar NE, Eldegla HE, Soliman HM.	Sci Rep	10.1038/s41598-024-56064-8	2024
	Enhancement of disease resistance, growth potential, and photosynthesis in tomato (Solanum lycopersicum) by inoculation with an endophytic actinobacterium, Streptomyces thermocarboxydus strain BPSAC147.	Passari AK, Upadhyaya K, Singh G, Abdel-Azeem AM, Thankappan S, Uthandi S, Hashem A, Abd Allah EF, Malik JA, As A, Gupta VK, Ranjan S, Singh BP.	PLoS One	10.1371/journal.pone.0219014	2019
Metabolism	Microbial conversion of ansamitocin.	Nakahama K, Izawa M, Asai M, Kida M, Kishi T	J Antibiot (Tokyo)	10.7164/antibiotics.34.1581	1981

References

#9443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40301
#18580	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces minutiscleroticus (DSM 40301, ATCC 17757, CBS 662.72)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014650875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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