Name: Streptomyces massasporeus 602
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15396

Type strain:

Species: Streptomyces massasporeus

Strain Designation: 602

Culture col. no.: DSM 40035, ATCC 19785, CBS 537.68, IFO 12796, ISP 5035, JCM 4139, JCM 4593, NBRC 12796, RIA 1064, OEU 602, BCRC 13647, CGMCC 4.1433, IFO 3841, KCTC 19943, LMG 19362, NBRC 3841, NRRL B-3300, RIA 652, VKM Ac-578

Strain history: KCC S-0139 <-- R. Shinobu 602.

NCBI tax ID(s): 67324 (species)

SI-ID 13362

LMG 19362, ATCC 19785, CCRC 13647, DSM 40035, IFO 12796, IFO 3841, JCM 4139, JCM 4593, NRRL B-3300, VKM Ac-578, IFO 16225, CBS 537.68, AS 4.1333, AS 4.1433, NBRC 12796, NBRC 3841, BCRC 13647, KCTC 19943, CGMCC 4.1433

Section

Streptomyces massasporeus 602 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces massasporeus**
	Full Scientific Name (LPSN)	Streptomyces massasporeus Shinobu and Kawato 1959 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.137

[Ref.: #19390]	Colony color	Red/violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 2

[Ref.: #19390]	Colony color	Violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 3

[Ref.: #19390]	Colony color	Violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 4

[Ref.: #19390]	Colony color	Violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 5

[Ref.: #19390]	Colony color	Violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 6

[Ref.: #19390]	Colony color	Violet
[Ref.: #19390]	Incubation period	10-14 days
[Ref.: #19390]	Cultivation medium used	ISP 7

[Ref.: #19390]	Multicellular complex forming ability	yes
[Ref.: #19390]	Multicellular complex name	Aerial Mycelium
[Ref.: #19390]	Multicellular complex color	Grey/Violet
[Ref.: #19390]	Medium Name (multicellularity)	ISP 2

[Ref.: #19390]	Multicellular complex forming ability	yes
[Ref.: #19390]	Multicellular complex name	Aerial Mycelium
[Ref.: #19390]	Multicellular complex color	Grey/Violet
[Ref.: #19390]	Medium Name (multicellularity)	ISP 3

[Ref.: #19390]	Multicellular complex forming ability	yes
[Ref.: #19390]	Multicellular complex name	Aerial Mycelium
[Ref.: #19390]	Multicellular complex color	Grey/Violet
[Ref.: #19390]	Medium Name (multicellularity)	ISP 4

[Ref.: #19390]	Multicellular complex forming ability	yes
[Ref.: #19390]	Multicellular complex name	Aerial Mycelium
[Ref.: #19390]	Multicellular complex color	Grey/Violet
[Ref.: #19390]	Medium Name (multicellularity)	ISP 5

[Ref.: #19390]	Multicellular complex forming ability	no
[Ref.: #19390]	Medium Name (multicellularity)	ISP 6

[Ref.: #19390]	Multicellular complex forming ability	yes
[Ref.: #19390]	Multicellular complex name	Aerial Mycelium
[Ref.: #19390]	Multicellular complex color	Grey/Violet
[Ref.: #19390]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium

ISP 3

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Culture medium

ISP 4

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Culture medium

ISP 5

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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		Temperature
[Ref.: #9234]	growth	28 °C
[Ref.: #19390]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9234]	Temperature range	mesophilic
[Ref.: #19390]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19390]	Spore description	Formation of spore chains: spira, spore surface: smooth
[Ref.: #19390]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19390]		NaCl		maximum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19390]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19390]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19390]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19390]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19390]	mannitol ChEBI	+
[Ref.: #19390]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19390]	raffinose ChEBI	-
[Ref.: #19390]	rhamnose ChEBI	-
[Ref.: #19390]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19390]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19390]	256	+	-	-	-	-	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9234]	Sample type/isolated from	soil
[Ref.: #9234]	Country	Japan
[Ref.: #9234]	Country ISO 3 Code	JPN
[Ref.: #9234]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Doro, Wakayama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9234]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19390]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces massasporeus strain DSM 40035 16S ribosomal RNA gene, partial sequence	AY999836	1420	ENA	67324 tax ID	*
[Ref.: #20218]	Streptomyces massasporeus gene for 16S rRNA, partial sequence	AB122720	565	ENA	67324 tax ID	*
[Ref.: #20218]	Streptomyces massasporeus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4593	D44253	121	ENA	67324 tax ID	*
[Ref.: #20218]	Streptomyces massasporeus 16S rRNA gene, type strain LMG 19362	AJ781323	1467	ENA	67324 tax ID	*
[Ref.: #20218]	Streptomyces massasporeus gene for 16S rRNA, partial sequence, strain: NBRC 12796	AB184152	1469	ENA	67324 tax ID	*
[Ref.: #20218]	Streptomyces massasporeus gene for 16S rRNA, partial sequence, strain: NBRC 3841	AB184804	1445	ENA	67324 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces massasporeus JCM 4139	GCA_014648995	scaffold	GenBank	67324 tax ID	*
[Ref.: #66792]	Streptomyces massasporeus strain JCM 4139	67324.3	wgs	PATRIC	67324 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces massasporeus JCM 4139 NCBI: GCA_014648995.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces massasporeus JCM 4139 NCBI: GCA_014648995.1
[Ref.: #69480]	flagellated	no	98.157	no
[Ref.: #69480]	gram-positive	yes	88.98	no
[Ref.: #69480]	anaerobic	no	99.303	no
[Ref.: #69480]	aerobic	yes	94.054	no
[Ref.: #69480]	halophile	no	94.241	no
[Ref.: #69480]	spore-forming	yes	95.365	no
[Ref.: #69480]	thermophile	no	98.211	yes
[Ref.: #69480]	glucose-util	yes	90.254	no
[Ref.: #69480]	motile	no	94.054	no
[Ref.: #69480]	glucose-ferment	no	89.842	no

Availability in culture collections External links

[Ref.: #9234]

Culture collection no.

DSM 40035, ATCC 19785, CBS 537.68, IFO 12796, ISP 5035, JCM 4139, JCM 4593, NBRC 12796, RIA 1064, OEU 602, BCRC 13647, CGMCC 4.1433, IFO 3841, KCTC 19943, LMG 19362, NBRC 3841, NRRL B-3300, RIA 652, VKM Ac-578

[Ref.: #84486]

SI-ID 13362

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil.	Rottig A, Atasayar E, Meier-Kolthoff JP, Sproer C, Schumann P, Schauer J, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001839	2017	*

References

#9234

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40035

#19390

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84486

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13362.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces massasporeus JCM 4139

Streptomyces massasporeus JCM 4139

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