Name: Streptomyces lucensis FI 1163
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15386

Type strain:

Species: Streptomyces lucensis

Strain Designation: FI 1163

Culture col. no.: DSM 40317, AS 4.1855, ATCC 17804, ATCC 25468, CBS 701.69, IFO 13056, ISP 5317, JCM 4490, NBRC 13056, RIA 1248, BCRC 15141, CGMCC 4.1855, CGMCC 4.2004, NCIMB 12679, NRRL B-16066, NRRL B-5626, VKM Ac-1737

Strain history: KCC S-0490 <-- IFO 13056 <-- SAJ <-- ISP 5317 <-- Farmitalia FI 1163.

NCBI tax ID(s): 1306176 (strain), 67319 (species)

SI-ID 45604

ATCC 17804, ATCC 25468, IFO 13056, DSM 40317, JCM 4490, NCIMB 12679, NRRL B-16066, NRRL B-5626, VKM Ac-1737, CBS 701.69, NBRC 13056, AS 4.1855, BCRC 15141, CCRC 15141, CGMCC 4.1855, LMG 20065, AS 4.2004, CGMCC 4.2004

Section

Streptomyces lucensis FI 1163 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lucensis**
	Full Scientific Name (LPSN)	Streptomyces lucensis Arcamone et al. 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.513

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9455]	growth	28 °C
[Ref.: #18581]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9455]	Temperature range	mesophilic
[Ref.: #18581]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

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Name of produced compound

lucensomycin (a tetraene)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18581]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18581]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18581]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18581]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18581]	mannitol ChEBI	+
[Ref.: #18581]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18581]	raffinose ChEBI	-
[Ref.: #18581]	rhamnose ChEBI	-
[Ref.: #18581]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18581]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	lucimycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18581]	139	+	-	-	-	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9455]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18581]	Biosafety level	1	German classification
[Ref.: #9455]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces lucensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4490	D44183	120	ENA	1306176 tax ID	*
[Ref.: #20218]	Streptomyces lucensis gene for 16S rRNA, partial sequence, strain: NBRC 13056	AB184280	1434	ENA	1306176 tax ID	*
[Ref.: #20218]	Streptomyces lucensis strain NRRL B-5626T 16S ribosomal RNA gene, partial sequence	DQ442522	1490	ENA	1306176 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces lucensis JCM 4490	GCA_014650035	scaffold	GenBank	1306176 tax ID	*
[Ref.: #66792]	Streptomyces lucensis JCM 4490	GCA_001315365	contig	GenBank	1306176 tax ID	*
[Ref.: #66792]	Streptomyces lucensis JCM 4490	1306176.7	wgs	PATRIC	1306176 tax ID	*
[Ref.: #66792]	Streptomyces lucensis JCM 4490	1306176.6	wgs	PATRIC	1306176 tax ID	*
[Ref.: #66792]	Streptomyces lucensis JCM 4490	2734481984	draft	JGI IMG/M	1306176 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lucensis JCM 4490 JCM 4490 NCBI: GCA_014650035.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lucensis JCM 4490 JCM 4490 NCBI: GCA_014650035.1
[Ref.: #69480]	flagellated	no	98.089	no
[Ref.: #69480]	gram-positive	yes	90.255	no
[Ref.: #69480]	anaerobic	no	98.853	no
[Ref.: #69480]	aerobic	yes	90.915	no
[Ref.: #69480]	halophile	no	95.464	no
[Ref.: #69480]	spore-forming	yes	94.764	no
[Ref.: #69480]	thermophile	no	96.883	yes
[Ref.: #69480]	glucose-util	yes	89.249	yes
[Ref.: #69480]	motile	no	94.154	no
[Ref.: #69480]	glucose-ferment	no	90.086	no

Availability in culture collections External links

[Ref.: #9455]

Culture collection no.

DSM 40317, AS 4.1855, ATCC 17804, ATCC 25468, CBS 701.69, IFO 13056, ISP 5317, JCM 4490, NBRC 13056, RIA 1248, BCRC 15141, CGMCC 4.1855, CGMCC 4.2004, NCIMB 12679, NRRL B-16066, NRRL B-5626, VKM Ac-1737

[Ref.: #84476]

SI-ID 45604

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.	Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003550	2019	*
Phylogeny	Streptomyces jiujiangensis sp. nov., isolated from soil in South China.	Zhang BH, Cheng J, Li L, Zhang YG, Wang HF, Li HQ, Yang JY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0132-5	2014	*
Phylogeny	Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment.	Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9618-6	2011	*

References

#9455

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40317

#18581

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84476

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45604.1 )

* These data were automatically processed and therefore are not curated

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