Streptomyces lucensis (DSM 40317, AS 4.1855, ATCC 17804)

Name: Streptomyces lucensis (DSM 40317, AS 4.1855, ATCC 17804)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15386

Type strain

Strain Designation FI 1163

Culture col. no. DSM 40317 AS 4.1855 ATCC 17804 ATCC 25468 CBS 701.69 13 more

NCBI tax ID(s) 1306176 67319

Special Collections DSMZ JCM Wink compendium

History DSMZ <- E.B. Shirling, ISP <- B. Camerino, Farmitalia, Milano, FI 1163 JCM <-- KCC S-0490 <-- IFO 13056 <-- SAJ <-- ISP 5317 <-- Farmitalia FI 1163.

Links

Streptomyces lucensis FI 1163 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45604

ATCC 17804,ATCC 25468,IFO 13056,DSM 40317,JCM 4490,NCIMB 12679,NRRL B-16066,NRRL B-5626,VKM Ac-1737,CBS 701.69,NBRC 13056,AS 4.1855,BCRC 15141,CCRC 15141,CGMCC 4.1855,LMG 20065,AS 4.2004,CGMCC 4.2004

@ref 20215

Last LPSN update 2026-05-29 08:28:31

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lucensis

Full scientific name Streptomyces lucensis Arcamone et al. 1957 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces lucensis** (1)	Type strain
126521	S. lucensis ST002902,

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		92.669
125439		98.225	positive

Multimedia

@ref:	9455
multimedia content:	DSM_40317.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40317.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9455	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9455	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9455	positive	growth	28
18581	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.532

Spore formation

@ref	Spore formation	Confidence
125438		91.972

Compound production

9455

Compoundlucensomycin (a tetraene)

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18581	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18581	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
18581	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18581	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18581	29864 ChEBI	mannitol	+
18581	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18581	16634 ChEBI	raffinose	-
18581	26546 ChEBI	rhamnose	-
18581	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18581	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
67770	135874 ChEBI	lucimycin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18581	+	-	-	-	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9455

Sample typesoil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9455	1	Risk group (German classification) According to TRBA 466
18581	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465003v1 assembly for Streptomyces lucensis JCM 4490	scaffold	GCA_014650035	1306176.7		1306176	66.02
66792	ASM131536v1 assembly for Streptomyces lucensis JCM 4490	contig	GCA_001315365	1306176.6	2734481984	1306176	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces lucensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4490	D44183	120	1306176
20218	Streptomyces lucensis gene for 16S rRNA, partial sequence, strain: NBRC 13056	AB184280	1434	1306176
20218	Streptomyces lucensis strain NRRL B-5626T 16S ribosomal RNA gene, partial sequence	DQ442522	1490	1306176
124043	Streptomyces lucensis JCM 4490 16S ribosomal RNA gene, partial sequence.	MT760555	1375	1306176

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1465003v1 assembly for Streptomyces lucensis JCM 4490
NCBI: GCA_014650035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.53	no
125439	motility	BacteriaNetⓘ	no	92.67	no
125439	gram_stain	BacteriaNetⓘ	positive	98.23	no
125439	spore_formation	BacteriaNetⓘ	yes	89.22	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lucensis JCM 4490 JCM 4490
NCBI: GCA_014650035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.01	no
125438	anaerobic	anaerobicⓘ	no	94.50	no
125438	aerobic	aerobicⓘ	yes	86.16	no
125438	spore-forming	spore-formingⓘ	yes	91.97	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	[Amylase inhibitors from Streptomyces lucensis VKPM Ac-1743 and Streptomyces violaceus VKPM Ac-1734].	Sharova NIu.	Prikl Biokhim Mikrobiol	10.7868/s0555109915010158	2015
	Isolation, structure, and antibacterial activities of lucensimycins D-G, discovered from Streptomyces lucensis MA7349 using an antisense strategy.	Singh SB, Zink DL, Dorso K, Motyl M, Salazar O, Basilio A, Vicente F, Byrne KM, Ha S, Genilloud O.	J Nat Prod	10.1021/np8005106	2009
Metabolism	Discovery of lucensimycins A and B from Streptomyces lucensis MA7349 using an antisense strategy.	Singh SB, Zink DL, Huber J, Genilloud O, Salazar O, Diez MT, Basilio A, Vicente F, Byrne KM.	Org Lett	10.1021/ol062041r	2006
	Sterol Sponge Mechanism Is Conserved for Glycosylated Polyene Macrolides.	Guo X, Zhang J, Li X, Xiao E, Lange JD, Rienstra CM, Burke MD, Mitchell DA.	ACS Cent Sci	10.1021/acscentsci.1c00148	2021
	Extraction, Isolation, Characterization, and Bioactivity of Polypropionates and Related Polyketide Metabolites from the Caribbean Region.	Rodriguez-Berrios RR, Rios-Delgado AM, Perdomo-Lizardo AP, Cardona-Rivera AE, Vidal-Rosado AG, Narvaez-Lozano GA, Nieves-Quinones IA, Rodriguez-Vargas JA, Alamo-Diverse KY, Lebron-Acosta N, Medina-Berrios N, Rivera-Lugo PS, Avellanet-Crespo YA, Ortiz-Colon YW.	Antibiotics (Basel)	10.3390/antibiotics12071087	2023
Phylogeny	Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.	Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003550	2019
Phylogeny	Streptomyces jiujiangensis sp. nov., isolated from soil in South China.	Zhang BH, Cheng J, Li L, Zhang YG, Wang HF, Li HQ, Yang JY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0132-5	2014
Phylogeny	Streptomyces shenzhenensis sp. nov., a novel actinomycete isolated from mangrove sediment.	Hu H, Lin HP, Xie Q, Li L, Xie XQ, Sun M, Hong K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9618-6	2011

References

#9455	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40317
#18581	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Streptomyces lucensis (DSM 40317, AS 4.1855, ATCC 17804)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014650035

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media