Name: Streptomyces litmocidini 1823/55
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15378

Type strain:

Species: Streptomyces litmocidini

Strain Designation: 1823/55

Culture col. no.: DSM 40164, ATCC 19914, CBS 533.68, IFO 12792, ISP 5164, JCM 4394, NBRC 12792, RIA 1060, ATCC 19780, BCRC 11866, CGMCC 4.1902, INA 1823/55, NRRL B-3635, VKM Ac-1887, VTT E-072753

Strain history: KCC S-0394 <-- IFO 12792 <-- SAJ <-- ISP 5164 <-- INA 1823/55.

NCBI tax ID(s): 67318 (species)

SI-ID 37158

ATCC 19914, ATCC 19780, IFO 12792, DSM 40164, JCM 4394, CCRC 11866, NRRL B-3635, VKM Ac-1887, CBS 533.68, NBRC 12792, BCRC 11866, CGMCC 4.1902, VTT E-072753

Other strains from Streptomyces litmocidini

S. litmocidini ST027643(HKI),
S. litmocidini ST021776(HKI),
S. litmocidini ST002651(HKI),
S. litmocidini ST018433(HKI),

Section

Streptomyces litmocidini 1823/55 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces litmocidini**
	Full Scientific Name (LPSN)	Streptomyces litmocidini (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces litmocidini"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.395

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9360]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9360]

Culture medium growth

[Ref.: #9360]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9360]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9360]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9360]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9360]	Name of produced compound	litmocidin
[Ref.: #9360]	Name of produced compound	granaticin
[Ref.: #67770]	Name of produced compound	Litomocidin

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9360]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184149 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6254
Animal Samples	471
Plant Samples	2191
Total Samples	9252

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9360]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces litmocidini gene for 16S rRNA, partial sequence	AB122758	564	ENA	67318 tax ID	*
[Ref.: #20218]	Streptomyces litmocidini gene for 16S ribosomal RNA, partial sequence, strain: JCM 4394	D44109	120	ENA	67318 tax ID	*
[Ref.: #20218]	Streptomyces litmocidini gene for 16S rRNA, partial sequence, strain: NBRC 12792	AB184149	1461	ENA	67318 tax ID	*
[Ref.: #20218]	Streptomyces litmocidini strain NRRL B-3635 16S ribosomal RNA gene, partial sequence	EF654101	1487	ENA	67318 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces litmocidini JCM 4394	GCA_014649755	scaffold	GenBank	67318 tax ID	*
[Ref.: #66792]	Streptomyces litmocidini strain JCM 4394	67318.3	wgs	PATRIC	67318 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces litmocidini JCM 4394 NCBI: GCA_014649755.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces litmocidini JCM 4394 NCBI: GCA_014649755.1
[Ref.: #69480]	flagellated	no	97.581	no
[Ref.: #69480]	gram-positive	yes	87.7	no
[Ref.: #69480]	anaerobic	no	99.316	no
[Ref.: #69480]	aerobic	yes	91.82	no
[Ref.: #69480]	halophile	no	95.118	no
[Ref.: #69480]	spore-forming	yes	94.322	no
[Ref.: #69480]	glucose-util	yes	89.253	no
[Ref.: #69480]	thermophile	no	99.188	yes
[Ref.: #69480]	motile	no	93.973	no
[Ref.: #69480]	glucose-ferment	no	88.995	no

Availability in culture collections External links

[Ref.: #9360]

Culture collection no.

DSM 40164, ATCC 19914, CBS 533.68, IFO 12792, ISP 5164, JCM 4394, NBRC 12792, RIA 1060, ATCC 19780, BCRC 11866, CGMCC 4.1902, INA 1823/55, NRRL B-3635, VKM Ac-1887, VTT E-072753

[Ref.: #84468]

SI-ID 37158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes.	Hix GR, Khan MS, Miller MT, Napier EC, O'Brien AL, White RP, Baron SF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005266	2022	*
Enzymology	Construction and characterization of new cloning vectors derived from Streptomyces griseobrunneus plasmid pBT1 and containing amikacin and sulfomycin resistance genes.	Nakanishi N, Oshida T, Yano S, Takeda K, Yamaguchi T, Ito Y	Plasmid	10.1016/0147-619x(86)90040-5	1986	*

References

#9360

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40164

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84468

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37158.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces litmocidini JCM 4394

Streptomyces litmocidini JCM 4394

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