Streptomyces litmocidini (DSM 40164, ATCC 19914, CBS 533.68)

Name: Streptomyces litmocidini (DSM 40164, ATCC 19914, CBS 533.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15378

Type strain

Strain Designation 1823/55

Culture col. no. DSM 40164 ATCC 19914 CBS 533.68 IFO 12792 ISP 5164 11 more

NCBI tax ID(s) 67318

Special Collections DSMZ JCM

History <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA, 1823/55 KCC S-0394 <-- IFO 12792 <-- SAJ <-- ISP 5164 <-- INA 1823/55.

Links

Streptomyces litmocidini 1823/55 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 37158

ATCC 19914,ATCC 19780,IFO 12792,DSM 40164,JCM 4394,CCRC 11866,NRRL B-3635,VKM Ac-1887,CBS 533.68,NBRC 12792,BCRC 11866,CGMCC 4.1902,VTT E-072753

@ref 20215

Last LPSN update 2026-02-09 11:21:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces litmocidini

Full scientific name Streptomyces litmocidini (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (1)

"Actinomyces litmocidini"

BacDive ID	Other strains from **Streptomyces litmocidini** (4)	Type strain
126488	S. litmocidini ST027643(HKI),
126489	S. litmocidini ST021776(HKI),
126490	S. litmocidini ST002651(HKI),
126491	S. litmocidini ST018433(HKI),

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.8
125438		90.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9360	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9360	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
125439		92.9
125438		92.615

Compound production

@ref	Compound
9360	litmocidin
9360	granaticin
67770	Litomocidin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
9360	soil
67770	Soil

Taxonmaps

69479

Global distribution of 16S sequence AB184149 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	336
Soil Samples	6254
Animal Samples	471
Plant Samples	2191
Total Samples	9252

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9360	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464975v1 assembly for Streptomyces litmocidini JCM 4394	scaffold	GCA_014649755	67318.3	8109489617	67318	61.46

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces litmocidini gene for 16S rRNA, partial sequence	AB122758	564	67318
20218	Streptomyces litmocidini gene for 16S ribosomal RNA, partial sequence, strain: JCM 4394	D44109	120	67318
20218	Streptomyces litmocidini gene for 16S rRNA, partial sequence, strain: NBRC 12792	AB184149	1461	67318
20218	Streptomyces litmocidini strain NRRL B-3635 16S ribosomal RNA gene, partial sequence	EF654101	1487	67318
124043	Streptomyces litmocidini strain JCM 4394 16S ribosomal RNA gene, partial sequence.	MT760536	1334	67318
124043	Streptomyces litmocidini strain NBRC 12792 16S ribosomal RNA gene, partial sequence.	MG657241	1461	67318

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces litmocidini JCM 4394
NCBI: GCA_014649755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.90	no
125439	motility	BacteriaNetⓘ	no	89.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces litmocidini JCM 4394
NCBI: GCA_014649755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.64	no
125438	anaerobic	anaerobicⓘ	no	98.37	no
125438	aerobic	aerobicⓘ	yes	89.69	no
125438	spore-forming	spore-formingⓘ	yes	92.62	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	90.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Acarbose May Function as a Competitive Exclusion Agent for the Producing Bacteria.	Tanoeyadi S, Tsunoda T, Ito T, Philmus B, Mahmud T.	ACS Chem Biol	10.1021/acschembio.2c00795	2023
	Atmospheric Precipitations, Hailstone and Rainwater, as a Novel Source of Streptomyces Producing Bioactive Natural Products.	Sarmiento-Vizcaino A, Espadas J, Martin J, Brana AF, Reyes F, Garcia LA, Blanco G.	Front Microbiol	10.3389/fmicb.2018.00773	2018
Pathogenicity	Screening of endophytic Streptomycetes isolated from Parthenium hysterophorus L. against nosocomial pathogens.	Tanvir R, Sajid I, Hasnain S.	Pak J Pharm Sci		2013
Enzymology	[Novel L-glutamate oxidase producing organisms: Streptomyces litmocidini and Streptomyces cremeus].	Dodzin ME, Vinogradova KA, Kotova IB.	Antibiot Khimioter		1998
	Bioactive Potential of Several Actinobacteria Isolated from Microbiologically Barely Explored Desert Habitat, Saudi Arabia.	Almuhayawi MS, Mohamed MSM, Abdel-Mawgoud M, Selim S, Al Jaouni SK, AbdElgawad H.	Biology (Basel)	10.3390/biology10030235	2021
Enzymology	Construction and characterization of new cloning vectors derived from Streptomyces griseobrunneus plasmid pBT1 and containing amikacin and sulfomycin resistance genes.	Nakanishi N, Oshida T, Yano S, Takeda K, Yamaguchi T, Ito Y	Plasmid	10.1016/0147-619x(86)90040-5	1986
Phylogeny	Characterization of Streptomyces nymphaeiformis sp. nov., and its taxonomic relatedness to other polyhydroxybutyrate-degrading streptomycetes.	Hix GR, Khan MS, Miller MT, Napier EC, O'Brien AL, White RP, Baron SF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005266	2022

References

#9360	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40164
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces litmocidini (DSM 40164, ATCC 19914, CBS 533.68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014649755

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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