Cobetia marina (CCUG 49561, KMM 3878)

Name: Cobetia marina (CCUG 49561, KMM 3878)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 153429

Type strain

Culture col. no. CCUG 49561 KMM 3878

NCBI tax ID(s) 28258

Special Collections CCUG

Links

Cobetia marina CCUG 49561 is an aerobe, mesophilic prokaryote that was isolated from Sandy sediment.

aerobe mesophilic

Name and taxonomic classification

SI-ID 409996

CCUG 49561

@ref 20215

Last LPSN update 2025-12-16 10:06:49

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Cobetia

Species Cobetia marina

Full scientific name Cobetia marina (Cobet et al. 1970) Arahal et al. 2002

Synonyms (6)

Halomonas halodurans
Cobetia pacifica
Pseudomonas marina
Halomonas marina
Deleya marina
"Arthrobacter marinus"

BacDive ID	Other strains from **Cobetia marina** (10)	Type strain
6002	C. marina DSM 4741, ATCC 25374, JCM 21022, CCUG 49558, ... (type strain)
6003	C. marina C-1, DSM 5160, ATCC 29686
6004	C. marina C-1, DSM 15425, ATCC 29686, LMG 10144
6005	C. marina A 140, DSM 50416, ATCC 27129, ICPB 3528, ...
135084	C. marina CIP 107853
143004	C. marina CCUG 16091, LMG 6842
143005	C. marina CCUG 16093
143006	C. marina CCUG 16095, ATCC 35142, JCM 21023, IAM 14108
161216	C. marina JCM 12325
163075	C. marina JCM 21027, IAM 14114

Morphology

Colony morphology

58606

Incubation period2-3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
58606	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

58606

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

58606

Fatty acid	Percentage	ECL
C16:0	29.2	16
C16:1 ω7c	22.4	15.819
C18:1 ω7c /12t/9t	18.6	17.824
C17:0 CYCLO	15.2	16.888
C12:0 3OH	5.9	13.455
C12:0	3.5	12
C19:0 CYCLO ω8c	3.1	18.9
C10:0	2.2	10

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
58606	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
58606	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
58606	Sandy sediment	2002-07-01	Sea of Japan offshore	Russia	RUS	Asia

Interaction and safety

Sequence information

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Pyruvate Substitutions on Glycoconjugates.	Hager FF, Sutzl L, Stefanovic C, Blaukopf M, Schaffer C.	Int J Mol Sci	10.3390/ijms20194929	2019
Genetics	The new sulfated O-specific polysaccharide from marine bacterium Cobetia pacifica KMM 3878, containing 3,4-O-[(S)-1-carboxyethylidene]-D-galactose and 2,3-O-disulfate-D-galactose.	Kokoulin MS, Kalinovsky AI, Komandrova NA, Tomshich SV, Romanenko LA, Vaskovsky VE	Carbohydr Res	10.1016/j.carres.2014.06.006	2014
Pathogenicity	Structure and antiproliferative activity of the polysaccharide from Halomonas aquamarina related to Cobetia pacifica.	Kokoulin MS, Sigida EN, Kuzmich AS, Ibrahim IM, Fedonenko YP, Konnova SA	Carbohydr Polym	10.1016/j.carbpol.2022.120125	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#58606	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49561
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cobetia marina (CCUG 49561, KMM 3878)

Name and taxonomic classification