Name: Streptomyces janthinus DSM 40206
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15332

Type strain:

Species: Streptomyces janthinus

Culture col. no.: DSM 40206, ATCC 15870, ATCC 23925, CBS 909.68, IFO 12879, INMI 117, ISP 5206, KCC S-0387, NBRC 12879, RIA 1155, RIA 659, JCM 4387, BCRC 12074, CCT 5008, NRRL B-3365, VKM Ac-208

Strain history: KCC S-0387 <-- IFO 12879 <-- SAJ <-- ISP 5206 <-- INMI 117.

NCBI tax ID(s): 67308 (species)

SI-ID 45593

ATCC 15870, ATCC 23925, IFO 12879, NRRL B-3365, DSM 40206, JCM 4387, CCRC 12074, CCT 5008, VKM Ac-208, CBS 909.68, LMG 8591, NBRC 12879, BCRC 12074

Other strains from Streptomyces janthinus

S. janthinus ST005082(HKI), IMET 40250

Section

Streptomyces janthinus DSM 40206 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces janthinus**
	Full Scientific Name (LPSN)	Streptomyces janthinus (Artamonova and Krassilnikov 1960) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces janthinus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9379]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9379]

Culture medium growth

[Ref.: #9379]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9379]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9379]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9379]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9379]	Sample type/isolated from	soil
[Ref.: #9379]	Country	USSR
[Ref.: #9379]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9379]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces janthinus partial 16S rRNA gene, strain ISP 5206	AJ399478	1448	ENA	67308 tax ID	*
[Ref.: #20218]	Streptomyces janthinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4387	D44102	121	ENA	67308 tax ID	*
[Ref.: #20218]	Streptomyces purpurascens gene for 16S rRNA, partial sequence, strain: NBRC 12879	AB184851	1477	ENA	1924 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces janthinus JCM 4387	GCA_014649675	scaffold	GenBank	67308 tax ID	*
[Ref.: #66792]	Streptomyces janthinus strain JCM 4387	67308.3	wgs	PATRIC	67308 tax ID	*

[Ref.: #67770]

GC-content

74.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces janthinus JCM 4387 NCBI: GCA_014649675.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces janthinus JCM 4387 NCBI: GCA_014649675.1
[Ref.: #69480]	flagellated	no	97.585	no
[Ref.: #69480]	gram-positive	yes	86.691	no
[Ref.: #69480]	anaerobic	no	99.036	no
[Ref.: #69480]	aerobic	yes	93.172	no
[Ref.: #69480]	halophile	no	92.757	no
[Ref.: #69480]	spore-forming	yes	95.345	no
[Ref.: #69480]	glucose-util	yes	89.491	no
[Ref.: #69480]	thermophile	no	98.509	no
[Ref.: #69480]	motile	no	93.013	no
[Ref.: #69480]	glucose-ferment	no	89.022	no

Availability in culture collections External links

[Ref.: #9379]

Culture collection no.

DSM 40206, ATCC 15870, ATCC 23925, CBS 909.68, IFO 12879, INMI 117, ISP 5206, KCC S-0387, NBRC 12879, RIA 1155, RIA 659, JCM 4387, BCRC 12074, CCT 5008, NRRL B-3365, VKM Ac-208

[Ref.: #84425]

SI-ID 45593

References

#9379

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40206

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84425

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45593.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces janthinus JCM 4387

Streptomyces janthinus JCM 4387

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