Streptomyces ipomoeae (DSM 40383, ATCC 25462, CBS 695.69)

Name: Streptomyces ipomoeae (DSM 40383, ATCC 25462, CBS 695.69)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15330

Type strain

Strain Designation 9820

Culture col. no. DSM 40383 ATCC 25462 CBS 695.69 CGMCC AS 4.1381 IFO 13050 4 more

NCBI tax ID(s) 103232

Special Collections DSMZ Wink compendium

Links

Streptomyces ipomoeae 9820 is a mesophilic prokaryote that was isolated from soft rot of sweet potatoes.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 389334

LMG 20520,ATCC 25462,IFO 13050,DSM 40383,VKM Ac-1734,CBS 695.69,NBRC 13050,ICMP 12541,KACC 20241,NRRL B-12321,CGMCC 4.1381

@ref 20215

Last LPSN update 2025-12-16 09:50:34

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces ipomoeae

Full scientific name Streptomyces ipomoeae corrig. (Person and Martin 1940) Waksman and Henrici 1948 (Approved Lists 1980)

Synonyms (2)

Streptomyces ipomoea
"Actinomyces ipomoea"

BacDive ID	Other strains from **Streptomyces ipomoeae** (1)	Type strain
15331	S. ipomoeae AE-419, DSM 40818, ATCC 11747, RIA 77

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9482	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9482	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
9482	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9482	positive	growth	28	mesophilic
18586	positive	optimum	28	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity
18586	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	+	from API 20E
18586	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	+	from API 20E
18586	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	from API 20E
18586	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	+	from API 20E
18586	29864 ChEBI	mannitol	-
18586	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	+	from API 20E
18586	16634 ChEBI	raffinose	+
18586	26546 ChEBI	rhamnose	-
18586	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	from API 20E
68368	16199 ChEBI	urea	+	from API 20E
18586	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68368	15688 ChEBI	acetoin	-	from API 20E
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18586	+	+	+	+	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

9482

Sample typesoft rot of sweet potatoes

Taxonmaps

69479

Global distribution of 16S sequence AY207593 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	18
Soil Samples	303
Animal Samples	44
Plant Samples	47
Total Samples	412

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18586	1	German classification According to TRBA 466
9482	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces ipomoeae strain CGMCC 4.1381 16S ribosomal RNA gene, partial sequence	JN566017	1384	103232
20218	Streptomyces ipomoeae 16S ribosomal RNA gene, partial sequence	AY207593	1490	103232
20218	Streptomyces ipomoeae strain DSM 40383 16S ribosomal RNA gene, partial sequence	AY999840	1420	103232
20218	Streptomyces ipomoeae gene for 16S rRNA, partial sequence, strain: NBRC 13050	AB184857	1463	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 303A.	LC571066	303	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 309G.	LC571067	309	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 310A.	LC571068	310	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 318A.	LC571069	318	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 294A.	LC571070	294	103232
124043	Streptomyces ipomoeae NBRC 13050 genes for 16S-23S intergenic spacer, 23S rRNA, partial sequence, variant 321A.	LC571071	321	103232

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Comparative genomics of the niche-specific plant pathogen Streptomyces ipomoeae reveal novel genome content and organization.	Soares NR, Huguet-Tapia JC, Guan D, Clark CA, Yang K-T, Kluchka OR, Thombal RS, Kartika R, Badger JH, Pettis GS.	Appl Environ Microbiol	10.1128/aem.00308-23	2023
Diversity of two-domain laccase-like multicopper oxidase genes in Streptomyces spp.: identification of genes potentially involved in extracellular activities and lignocellulose degradation during composting of agricultural waste.	Lu L, Zeng G, Fan C, Zhang J, Chen A, Chen M, Jiang M, Yuan Y, Wu H, Lai M, He Y.	Appl Environ Microbiol	10.1128/aem.00223-14	2014
Cloning and expression of a gene from Streptomyces scabies encoding a putative pathogenicity factor.	Bukhalid RA, Loria R.	J Bacteriol	10.1128/jb.179.24.7776-7783.1997	1997
Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.	Liu P, Xia Z, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004430	2020
Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.	Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002468	2017

References

#9482	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40383
#18586	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces ipomoeae (DSM 40383, ATCC 25462, CBS 695.69)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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