Name: Streptomyces ipomoeae 9820
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15330

Type strain:

Species: Streptomyces ipomoeae

Strain Designation: 9820

Culture col. no.: DSM 40383, ATCC 25462, CBS 695.69, CGMCC AS 4.1381, IFO 13050, ISP 5383, NBRC 13050, RIA 1242

Strain history: <- E.B. Shirling, ISP <- W.J. Martin, 9820

NCBI tax ID(s): 103232 (species)

SI-ID 389334

ATCC 25462, IFO 13050, DSM 40383, VKM Ac-1734, CBS 695.69, NBRC 13050, ICMP 12541, KACC 20241, NRRL B-12321, CGMCC 4.1381

Other strains from Streptomyces ipomoeae

S. ipomoeae AE-419, DSM 40818, ATCC 11747, ...

Section

Streptomyces ipomoeae 9820 is a mesophilic bacterium that was isolated from soft rot of sweet potatoes.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces ipomoeae**
	Full Scientific Name (LPSN)	Streptomyces ipomoeae (Person and Martin 1940) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces ipomoea"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9482]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9482]

Culture medium growth

[Ref.: #9482]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9482]

Culture medium composition

expand / minimize

[Ref.: #9482]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9482]

Culture medium growth

[Ref.: #9482]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9482]			growth	28 °C
[Ref.: #18586]			optimum	28 °C

[Ref.: #9482]	Temperature range	mesophilic
[Ref.: #18586]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18586]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18586]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18586]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18586]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18586]	mannitol ChEBI	-
[Ref.: #18586]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18586]	raffinose ChEBI	+
[Ref.: #18586]	rhamnose ChEBI	-
[Ref.: #18586]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18586]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18586]	144	+	+	+	+	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9482]	Sample type/isolated from	soft rot of sweet potatoes
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY207593 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	18
Soil Samples	303
Animal Samples	44
Plant Samples	47
Total Samples	412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18586]	Biosafety level	1	German classification
[Ref.: #9482]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces ipomoeae strain CGMCC 4.1381 16S ribosomal RNA gene, partial sequence	JN566017	1384	ENA	103232 tax ID	*
[Ref.: #20218]	Streptomyces ipomoeae 16S ribosomal RNA gene, partial sequence	AY207593	1490	ENA	103232 tax ID	*
[Ref.: #20218]	Streptomyces ipomoeae strain DSM 40383 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY297025	270	ENA	103232 tax ID	*
[Ref.: #20218]	Streptomyces ipomoeae strain DSM 40383 16S ribosomal RNA gene, partial sequence	AY999840	1420	ENA	103232 tax ID	*
[Ref.: #20218]	Streptomyces ipomoeae gene for 16S rRNA, partial sequence, strain: NBRC 13050	AB184857	1463	ENA	103232 tax ID	*

Availability in culture collections External links

[Ref.: #9482]

Culture collection no.

DSM 40383, ATCC 25462, CBS 695.69, CGMCC AS 4.1381, IFO 13050, ISP 5383, NBRC 13050, RIA 1242

[Ref.: #84423]

SI-ID 389334

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces arboris sp. nov., isolated from Populus euphratica wetland soil.	Liu P, Xia Z, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004430	2020	*
Phylogeny	Streptomyces capitiformicae sp. nov., a novel actinomycete producing angucyclinone antibiotics isolated from the head of Camponotus japonicus Mayr.	Jiang S, Piao C, Yu Y, Cao P, Li C, Yang F, Li M, Xiang W, Liu C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002468	2017	*

References

#9482

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40383

#18586

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84423

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389334.1 )

* These data were automatically processed and therefore are not curated

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