Name: Kitasatospora indigofera DSM 40124
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15328

Type strain:

Species: Kitasatospora indigofera

Culture col. no.: DSM 40124, AS 4.1848, ATCC 23924, CBS 908.68, IFO 12878, ISP 5124, NBRC 12878, RIA 1127, OEU 709, JCM 4646, BCRC 13773, CGMCC 4.1848, CGMCC 4.1888, IFO 3868, IMET 42938, NBRC 3868, NCIMB 9718, NRRL B-3301

Strain history: KCC S-0646 <-- IFO 12878 <-- SAJ <-- ISP 5124 <-- R. Shinobu 709.

NCBI tax ID(s): 67307 (species)

SI-ID 38290

ATCC 23924, IFO 12878, DSM 40124, JCM 4646, CCRC 13773, IFO 3868, IMET 42938, NCIMB 9718, NRRL B-3301, CBS 908.68, NBRC 12878, NBRC 3868, AS 4.1848, BCRC 13773, NCIB 9718, CGMCC 4.1848, AS 4.1888, CGMCC 4.1888

Other strains from Kitasatospora indigofera

K. indigofera ST027557(HKI),
K. indigofera JCM 4151, IFO 3928, NBRC 3928

Section

Kitasatospora indigofera DSM 40124 is a mesophilic bacterium that was isolated from Soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	**Kitasatospora indigofera**
	Full Scientific Name (LPSN)	Kitasatospora indigofera (Shinobu and Kawato 1960) Nouioui et al. 2018

Synonym

Streptomyces indigoferus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9328]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9328]

Culture medium growth

[Ref.: #9328]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9328]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9328]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9328]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sendai City, Miyagi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB184809 (>99% sequence identity) for Streptomycetaceae from Microbeatlas

Aquatic Samples	54
Soil Samples	1733
Animal Samples	127
Plant Samples	125
Total Samples	2039

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9328]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces indigoferus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4646	D44285	120	ENA	67307 tax ID	*
[Ref.: #20218]	Streptomyces indigoferus gene for 16S rRNA, partial sequence, strain: NBRC 12878	AB184214	1453	ENA	67307 tax ID	*
[Ref.: #20218]	Streptomyces indigoferus gene for 16S rRNA, partial sequence, strain: NBRC 3868	AB184809	1439	ENA	67307 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kitasatospora indigofera JCM 4646	GCA_014655955	scaffold	GenBank	67307 tax ID	*
[Ref.: #66792]	Streptomyces indigoferus strain JCM 4646	67307.3	wgs	PATRIC	67307 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kitasatospora indigofera JCM 4646 NCBI: GCA_014655955.1
[Ref.: #69480]	motile	no	93.678	no
[Ref.: #69480]	flagellated	no	97.747	no
[Ref.: #69480]	gram-positive	yes	89.984	no
[Ref.: #69480]	anaerobic	no	99.365	no
[Ref.: #69480]	aerobic	yes	92.602	no
[Ref.: #69480]	halophile	no	92.008	no
[Ref.: #69480]	spore-forming	yes	94.031	no
[Ref.: #69480]	glucose-util	yes	90.962	no
[Ref.: #69480]	thermophile	no	98.589	no
[Ref.: #69480]	glucose-ferment	no	88.573	no

Availability in culture collections External links

[Ref.: #9328]

Culture collection no.

DSM 40124, AS 4.1848, ATCC 23924, CBS 908.68, IFO 12878, ISP 5124, NBRC 12878, RIA 1127, OEU 709, JCM 4646, BCRC 13773, CGMCC 4.1848, CGMCC 4.1888, IFO 3868, IMET 42938, NBRC 3868, NCIMB 9718, NRRL B-3301

[Ref.: #84421]

SI-ID 38290

References

#9328

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40124

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84421

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38290.1 )

* These data were automatically processed and therefore are not curated

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Kitasatospora indigofera JCM 4646

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