Name: Lysinibacillus sphaericus Gibson 1013
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1532

Type strain:

Species: Lysinibacillus sphaericus

Strain Designation: Gibson 1013, 1013

Culture col. no.: DSM 28, ATCC 14577, CCM 2120, JCM 2502, NCIB 9370, NCTC 10338, CCUG 7428, LMG 7134, BCRC 12825, CECT 33, CIP 65.30, IAM 13420, IFO 15095, KCTC 3346, NBRC 15095, NCCB 75018, NCIMB 9370, NRRL B-23268, VKM B-509, NCDO 1767

Strain history: CIP <- 1965, ATCC <- R.E. Gordon, New Jersey Agri. Exper. Stat., New Brunswick, USA <- T. Gibson: strain 1013 <- Kràl Collection, Vienna, Austria <- M. Wund <- E. Neide

NCBI tax ID(s): 1354027 (strain), 1421 (species)

SI-ID 7137

LMG 7134, ATCC 14577, CCM 2120, CCUG 7428, CECT 33, IAM 13420, JCM 2502, NCFB 1767, NCIB 9370, NCTC 10338, NCDO 1767, CCRC 12825, NCIMB 9370, IFO15095, LMD 75.18, KCTC 3346, NBRC 15095, NRRL B-23268, NCCB 75018, BCRC 12825, HAMBI 1938, CCT 0514, KACC 10554, NCIM 2478, VKM B-509, VTT E-97782, DSM 28, CIP 65.30

Other strains from Lysinibacillus sphaericus

L. sphaericus S60-67, DSM 461
L. sphaericus S64-67, DSM 462
L. sphaericus E 1-65, DSM 463
L. sphaericus 9602, DSM 396, NCTC 9602, CRBIP3.5052
L. sphaericus Gibson 97, DSM 488, ATCC 19394, ...
L. sphaericus SSII-1, DSM 1866
L. sphaericus 1593, DSM 1867
L. sphaericus NRS-732, DSM 2899, ATCC 245, CRBIP3.2498, ...
L. sphaericus Claussen, 1911, N.R. Smith, 966, ...
L. sphaericus DSM 7258, NRRL NRS-1198
L. sphaericus DSM 7260, NRRL NRS-1691
L. sphaericus DSM 7261, NRRL NRS-1692
L. sphaericus DSM 8444, NRS 717, CRBIP3.5176
L. sphaericus M-GX18, DSM 24076, CCTCC AB 2010389
L. sphaericus K3514, K3514T, DSM 25877, CCTCC ...
L. sphaericus Army 87, CIP 106829, NRRL NRS-1186
L. sphaericus CIP 103521, ATCC 17932
L. sphaericus A20, CIP 106828, NRRL NRS-800
L. sphaericus 25, CIP 104788, ATCC 4525, CCM ...
L. sphaericus 209.87, CIP 102939
L. sphaericus 14, CIP 106826, NRRL NRS-1695
L. sphaericus CIP 103415
L. sphaericus CIP 102465
L. sphaericus CIP 106825, NRRL BD-99
L. sphaericus 2518, CIP 51.25, CRBIP3.2497
L. sphaericus CIP 51.16, CRBIP3.2496
L. sphaericus 471, NRS-344, CIP 52.89, IAM 1286, ...
L. sphaericus CCUG 453 E
L. sphaericus CCUG 29464, NRRL NRS-1756
L. sphaericus CCUG 32090
L. sphaericus CCUG 32712
L. sphaericus CCUG 33213
L. sphaericus CCUG 39777
L. sphaericus CCUG 44478 B
L. sphaericus CCUG 46460
L. sphaericus CCUG 47570
L. sphaericus CCUG 49579
L. sphaericus CCUG 63782
L. sphaericus JCM 20116, IAM 1228

Section

Lysinibacillus sphaericus Gibson 1013 is an aerobe, spore-forming, mesophilic human pathogen that was isolated from Unknown source.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Lysinibacillus*
	Species	**Lysinibacillus sphaericus**
	Full Scientific Name (LPSN)	Lysinibacillus sphaericus (Meyer and Neide 1904) Ahmed et al. 2007

	Synonym	Lysinibacillus varians
	Synonym	Bacillus sphaericus
	Synonym	Lysinibacillus mangiferahumi
	Synonym	Lysinibacillus mangiferihumi
	Synonym	Lysinibacillus tabacifolii

Information on morphological and physiological properties Morphology

[Ref.: #123252]	Gram stain	positive
[Ref.: #123252]	Cell shape	rod-shaped
[Ref.: #123252]	Motility	yes

[Ref.: #123252]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2029]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2029]

Culture medium growth

[Ref.: #2029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2029]

Culture medium composition

expand / minimize

[Ref.: #35013]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35013]

Culture medium growth

[Ref.: #35013]

Culture medium composition

expand / minimize

[Ref.: #123252]

Culture medium

CIP Medium 3

[Ref.: #123252]

Culture medium growth

[Ref.: #123252]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2029]		growth	30 °C
[Ref.: #35013]		growth	30 °C
[Ref.: #44997]		growth	30-37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123252]		growth	22-45 °C
[Ref.: #123252]	no	growth	10 °C
[Ref.: #123252]	no	growth	55 °C

[Ref.: #2029]	Temperature range	mesophilic
[Ref.: #35013]	Temperature range	mesophilic
[Ref.: #44997]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123252]	Temperature range	psychrophilic
[Ref.: #123252]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #123252]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44997]	Oxygen tolerance	aerobe
[Ref.: #123252]	Oxygen tolerance	obligate aerobe

[Ref.: #123252]

Ability of spore formation

yes

	Salt	Tested relation		Salt conc.
[Ref.: #123252]	NaCl		growth	0-4	%
[Ref.: #123252]	NaCl	no	growth	6	%
[Ref.: #123252]	NaCl	no	growth	8	%
[Ref.: #123252]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123252]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123252]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123252]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123252]	nitrate ChEBI	-	reduction
[Ref.: #123252]	nitrate ChEBI	-	respiration
[Ref.: #123252]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123252]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123252]		acetoin ChEBI	-
[Ref.: #123252]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123252]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123252]	amylase	-
[Ref.: #123252]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123252]	caseinase	-	3.4.21.50
[Ref.: #123252]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #123252]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123252]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123252]	gelatinase	+/-
[Ref.: #123252]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123252]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123252]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #123252]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123252]	oxidase	+
[Ref.: #123252]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123252]	tween esterase	+
[Ref.: #123252]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123252]	12043	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123252]	3208	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123252]	13083	-	+	+	+	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #123252]	Sample type/isolated from	Unknown source
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AJ310084 (>99% sequence identity) for Lysinibacillus from Microbeatlas

Aquatic Samples	49
Soil Samples	72
Animal Samples	210
Plant Samples	6
Total Samples	337

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2029]	Pathogenicity (human)	yes, in single cases
[Ref.: #2029]	Pathogenicity (animal)	yes
[Ref.: #2029]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123252]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus sphaericus gene for 16S rRNA, strain: IAM 13420	D16280	1484	ENA	1421 tax ID
[Ref.: #2029]	Bacillus sphaericus 16S ribosomal RNA gene, partial sequence	AF169495	1410	ENA	1421 tax ID
[Ref.: #67770]	B.sphaericus 16S ribosomal RNA	X60639	1430	ENA	1421 tax ID
[Ref.: #67770]	Bacillus sphaericus gene for 16S rRNA, partial sequence	AB271742	1477	ENA	1421 tax ID
[Ref.: #20218]	Bacillus sphaericus strain ATCC 14577 16S ribosomal RNA gene, partial sequence	DQ286299	1419	ENA	1421 tax ID	*
[Ref.: #20218]	Bacillus sphaericus 16S rRNA gene, strain DSM 28	AJ310084	1515	ENA	1421 tax ID	*
[Ref.: #20218]	Bacillus sphaericus complete 16S ribosomal RNA gene	L14010	1493	ENA	1421 tax ID	*
[Ref.: #20218]	Bacillus sphaericus clone BSPH-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478090	540	ENA	1421 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus sphaericus DSM 28	GCA_002982115	complete	GenBank	1421 tax ID
[Ref.: #67770]	Lysinibacillus sphaericus NRRL B-23268	GCA_005217555	contig	GenBank	1421 tax ID
[Ref.: #67770]	Lysinibacillus sphaericus NCTC10338	GCA_900445465	contig	GenBank	1421 tax ID
[Ref.: #67770]	Lysinibacillus sphaericus KCTC 3346 KCTC 3346(T)	GCA_000427235	contig	GenBank	1354027 tax ID
[Ref.: #67770]	Lysinibacillus sphaericus NBRC 15095	GCA_006539805	contig	GenBank	1421 tax ID
[Ref.: #66792]	Lysinibacillus sphaericus strain NCTC10338	1421.65	wgs	PATRIC	1421 tax ID	*

[Ref.: #2029]	GC-content	37.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2029]	GC-content	37.1 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus sphaericus KCTC 3346 PATRIC: 1354027.3
[Ref.: #69480]	motile	yes	85.24	no
[Ref.: #69480]	gram-positive	yes	90.08	no
[Ref.: #69480]	anaerobic	no	95.957	no
[Ref.: #69480]	halophile	no	91.681	no
[Ref.: #69480]	spore-forming	yes	96.58	no
[Ref.: #69480]	thermophile	no	99.922	no
[Ref.: #69480]	glucose-util	yes	84.578	no
[Ref.: #69480]	flagellated	yes	80.105	no
[Ref.: #69480]	aerobic	yes	87.917	yes
[Ref.: #69480]	glucose-ferment	no	89.599	no

Availability in culture collections External links

[Ref.: #2029]

Culture collection no.

DSM 28, ATCC 14577, CCM 2120, JCM 2502, NCIB 9370, NCTC 10338, CCUG 7428, LMG 7134, BCRC 12825, CECT 33, CIP 65.30, IAM 13420, IFO 15095, KCTC 3346, NBRC 15095, NCCB 75018, NCIMB 9370, NRRL B-23268, VKM B-509, NCDO 1767

[Ref.: #71178]

SI-ID 7137

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative genomics reveals Lysinibacillus sphaericus group comprises a novel species.	Gomez-Garzon C, Hernandez-Santana A, Dussan J	BMC Genomics	10.1186/s12864-016-3056-9	2016	*
Phylogeny	Lysinibacillus varians sp. nov., an endospore-forming bacterium with a filament-to-rod cell cycle.	Zhu C, Sun G, Chen X, Guo J, Xu M	Int J Syst Evol Microbiol	10.1099/ijs.0.068320-0	2014	*
Genetics	Genome Sequence of Lysinibacillus sphaericus Strain KCTC 3346T.	Jeong H, Jeong DE, Sim YM, Park SH, Choi SK	Genome Announc	10.1128/genomeA.00625-13	2013	*
Phylogeny	Lysinibacillus contaminans sp. nov., isolated from surface water.	Kampfer P, Martin K, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.049593-0	2013	*
Phylogeny	Lysinibacillus parviboronicapiens sp. nov., a low-boron-containing bacterium isolated from soil.	Miwa H, Ahmed I, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.65455-0	2009	*
Phylogeny	Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov.	Ahmed I, Yokota A, Yamazoe A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.63867-0	2007	*
Phylogeny	Bacillus decisifrondis sp. nov., isolated from soil underlying decaying leaf foliage.	Zhang L, Xu Z, Patel BKC	Int J Syst Evol Microbiol	10.1099/ijs.0.64440-0	2007	*
Phylogeny	Genetic polymorphism by RAPD-PCR and phenotypic characteristics of isolated thermotolerant Bacillus strains from hot spring sources.	Hazem A, Manar A	New Microbiol		2003	*
Pathogenicity	Comparison of the cellular fatty acid composition of a bacterium isolated from a human and alleged to be Bacillus sphaericus with that of Bacillus sphaericus isolated from a mosquito larvicide.	Siegel JP, Smith AR, Novak RJ	Appl Environ Microbiol	10.1128/aem.63.3.1006-1010.1997	1997	*
Pathogenicity	2-D protein crystals as an immobilization matrix for producing reaction zones in dipstick-style immunoassays.	Breitwieser A, Kupcu S, Howorka S, Weigert S, Langer C, Hoffmann-Sommergruber K, Scheiner O, Sleytr UB, Sara M	Biotechniques	10.2144/96215rr05	1996	*
Enzymology	Substrate-induced changes in sulfhydryl reactivity of bacterial D-amino acid transaminase.	Soper TS, Ueno H, Manning JM	Arch Biochem Biophys	10.1016/0003-9861(85)90001-3	1985	*
Enzymology	Cloning of the surface layer gene sllB from Bacillus sphaericus ATCC 14577 and its heterologous expression and purification.	Cui YB, Zhou Y, Liu WN, Chen QW, Ma GF, Shi WH, Wang YG, Yang L	Int J Mol Med	10.3892/ijmm.2012.890	2012	*
Metabolism	A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria.	Kontomina E, Garefalaki V, Fylaktakidou KC, Evmorfidou D, Eleftheraki A, Avramidou M, Udoh K, Panopoulou M, Felfoldi T, Marialigeti K, Fakis G, Boukouvala S	PLoS One	10.1371/journal.pone.0271125	2022	*

References

#2029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35013 ; Curators of the CIP;
#44997 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7428

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7137.1 )

#123252 Collection of Institut Pasteur ; Curators of the CIP; CIP 65.30
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lysinibacillus sphaericus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lysinibacillus sphaericus KCTC 3346

Change proposal

Change proposal