Name: Streptomyces platensis BJ 6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15310

Type strain:

Species: Streptomyces platensis

Strain Designation: BJ 6, 12096

Culture col. no.: DSM 40823, ATCC 14607, CGMCC 4.1873, CIP 106832, IFO 13786, IFO 13982, JCM 4954, LMG 19950, NBRC 13786, NBRC 13982, NRRL B-3248, KCTC 9782

Strain history: CIP <- 2000, IFO <- H. Kawaguchi, Bristol -Banyu Res. Inst. : strain 12096

NCBI tax ID(s): 249580 (species)

SI-ID 36122

ATCC 14607, CIP 106832, IFO 13786, DSM 40823, JCM 4954, NRRL B-3248, IFO 13982, KCTC 9782, NBRC 13786, NBRC 13982

Other strains from Streptomyces platensis

S. platensis DSM 40041, ATCC 13865, ATCC 23948, ... (type strain)
S. platensis DSM 41230, ATCC 23731, CMI 130, ... (type strain)
S. platensis DSM 929, NRRL 8035, UC 5330, JCM ...

Section

Streptomyces platensis BJ 6 is an obligate aerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces platensis**
	Full Scientific Name (LPSN)	Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

	Synonym	Streptomyces libani subsp. rufus
	Synonym	Streptomyces hygroscopicus subsp. glebosus
	Synonym	"Streptomyces* glebosus"*

Information on morphological and physiological properties Morphology

[Ref.: #120015]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120015]	Cell shape	rod-shaped

[Ref.: #120015]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.231

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9826]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9826]

Culture medium growth

[Ref.: #9826]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9826]

Culture medium composition

expand / minimize

[Ref.: #39729]

Culture medium

MEDIUM 129 - for Pseudonocardia, Nocardia, Skermania and Streptomyces seoulensis, Streptomyces stramineus

[Ref.: #39729]

Culture medium growth

[Ref.: #39729]

Culture medium composition

expand / minimize

[Ref.: #9826]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9826]

Culture medium growth

[Ref.: #9826]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120015]

Culture medium

CIP Medium 129

[Ref.: #120015]

Culture medium growth

[Ref.: #120015]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9826]		growth	28 °C
[Ref.: #39729]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120015]		growth	25-30 °C
[Ref.: #120015]	no	growth	10 °C
[Ref.: #120015]	no	growth	37 °C
[Ref.: #120015]	no	growth	41 °C
[Ref.: #120015]	no	growth	45 °C

[Ref.: #9826]	Temperature range	mesophilic
[Ref.: #39729]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120015]	Temperature range	mesophilic
[Ref.: #120015]	Temperature range	psychrophilic
[Ref.: #120015]	Temperature range	mesophilic
[Ref.: #120015]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120015]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9826]

Name of produced compound

glebomycin

	Salt	Tested relation		Salt conc.
[Ref.: #120015]	NaCl		growth	0-6	%
[Ref.: #120015]	NaCl	no	growth	8	%
[Ref.: #120015]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120015]	citrate ChEBI	-	carbon source
[Ref.: #120015]	esculin ChEBI	-	hydrolysis
[Ref.: #120015]	hippurate ChEBI	-	hydrolysis
[Ref.: #120015]	nitrate ChEBI	+	reduction
[Ref.: #120015]	nitrate ChEBI	-	respiration
[Ref.: #120015]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #67770]		glebomycin	yes
[Ref.: #120015]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120015]		acetoin ChEBI	-
[Ref.: #120015]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120015]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120015]	amylase	+
[Ref.: #120015]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120015]	caseinase	-	3.4.21.50
[Ref.: #120015]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120015]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #120015]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120015]	gelatinase	+/-
[Ref.: #120015]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120015]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120015]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120015]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120015]	oxidase	-
[Ref.: #120015]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120015]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120015]	tryptophan deaminase	-
[Ref.: #120015]	tween esterase	+
[Ref.: #120015]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120015]	1863	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	-	+	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	+	-	-	+	+	-	+	-	-	-	+	+	-	-	-	+	-	+	-	+	+	+	+	+	+	+	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120015]	9848	-	+	-	-	-	+	-	+	-	-	+	+	-	+	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9826]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9826]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120015]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]		X86067		ENA
[Ref.: #20218]	Streptomyces hygroscopicus 16S ribosomal RNA gene, partial sequence	U72167	269	ENA	1912 tax ID	*
[Ref.: #20218]	Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequence	AB122754	565	ENA	249580 tax ID	*
[Ref.: #20218]	Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequence, strain: NBRC 13786	AB184479	1474	ENA	249580 tax ID	*
[Ref.: #20218]	Streptomyces glebosus strain NRRL B-3248 16S ribosomal RNA gene, partial sequence	EU170120	1450	ENA	249580 tax ID	*
[Ref.: #20218]	Streptomyces hygroscopicus subsp. glebosus strain CGMCC 4.1873 16S ribosomal RNA gene, partial sequence	HQ244456	1373	ENA	249580 tax ID	*
[Ref.: #20218]	Streptomyces hygroscopicus subsp. glebosus 16S rRNA gene, type strain LMG 19950	AJ781386	1481	ENA	249580 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces glebosus NBRC 13786	GCA_009811575	contig	GenBank	249580 tax ID
[Ref.: #66792]	Streptomyces glebosus JCM 4954	GCA_014656235	scaffold	GenBank	249580 tax ID	*
[Ref.: #66792]	Streptomyces glebosus strain JCM 4954	249580.4	wgs	PATRIC	249580 tax ID	*
[Ref.: #66792]	Streptomyces glebosus strain NBRC 13786	249580.3	wgs	PATRIC	249580 tax ID	*

[Ref.: #67770]

GC-content

71.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces glebosus strain NBRC 13786 PATRIC: 249580.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces glebosus JCM 4954 NCBI: GCA_014656235.1
[Ref.: #69480]	flagellated	no	98.439	no
[Ref.: #69480]	gram-positive	yes	90.264	no
[Ref.: #69480]	anaerobic	no	99.116	no
[Ref.: #69480]	aerobic	yes	93.28	no
[Ref.: #69480]	halophile	no	89.694	no
[Ref.: #69480]	spore-forming	yes	96.163	no
[Ref.: #69480]	glucose-util	yes	90.888	no
[Ref.: #69480]	thermophile	no	98.485	yes
[Ref.: #69480]	motile	no	93.822	no
[Ref.: #69480]	glucose-ferment	no	91.036	no

Availability in culture collections External links

[Ref.: #9826]

Culture collection no.

DSM 40823, ATCC 14607, CGMCC 4.1873, CIP 106832, IFO 13786, IFO 13982, JCM 4954, LMG 19950, NBRC 13786, NBRC 13982, NRRL B-3248, KCTC 9782

[Ref.: #84403]

SI-ID 36122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Taxonomic evaluation of the Streptomyces hygroscopicus clade using multilocus sequence analysis and DNA-DNA hybridization, validating the MLSA scheme for systematics of the whole genus.	Rong X, Huang Y	Syst Appl Microbiol	10.1016/j.syapm.2011.10.004	2011	*

References

#9826

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40823

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39729 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84403

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36122.1 )

#120015 Collection of Institut Pasteur ; Curators of the CIP; CIP 106832
* These data were automatically processed and therefore are not curated

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Search for species Streptomyces platensis in external resources:
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Streptomyces glebosus strain NBRC 13786

Streptomyces glebosus JCM 4954

Change proposal

Change proposal