Streptomyces platensis (DSM 40823, ATCC 14607, CGMCC 4.1873)

Name: Streptomyces platensis (DSM 40823, ATCC 14607, CGMCC 4.1873)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15310

Type strain

Strain Designation BJ 6, 12096

Culture col. no. DSM 40823 ATCC 14607 CGMCC 4.1873 CIP 106832 IFO 13786 9 more

NCBI tax ID(s) 249580

Special Collections DSMZ JCM KCTC CIP

History DSMZ <- H.D. Tresner, BJ 6 JCM <-- KCC S-0954 <-- Bristol-Banyu Res. Labs.; 12096. CIP <- 2000, IFO <- H. Kawaguchi, Bristol -Banyu Res. Inst. : strain 12096

Links

Streptomyces platensis BJ 6 is an obligate aerobe, Gram-positive, rod-shaped bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36122

ATCC 14607,CIP 106832,IFO 13786,DSM 40823,JCM 4954,NRRL B-3248,IFO 13982,KCTC 9782,NBRC 13786,NBRC 13982

@ref 20215

Last LPSN update 2026-05-29 08:28:30

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces platensis

Full scientific name Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

Synonyms (3)

"Streptomyces glebosus"
Streptomyces libani subsp. rufus
Streptomyces hygroscopicus subsp. glebosus

BacDive ID	Other strains from **Streptomyces platensis** (3)	Type strain
15474	S. platensis DSM 40041, ATCC 13865, ATCC 23948, CBS 310.56, ... (type strain)
16307	S. platensis DSM 41230, ATCC 23731, CMI 130, IMRU 3918, ... (type strain)
15473	S. platensis DSM 929, NRRL 8035, UC 5330, JCM 4953, BCRC ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	positive		97.765
125439			92.936
120015	positive	rod-shaped

Colony morphology

120015

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9826	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39729	MEDIUM 129 - for Pseudonocardia, Nocardia, Skermania and Streptomyces seoulensis, Streptomyces stramineus		Distilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (10.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g)
9826	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
120015	CIP Medium 129	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9826	positive	growth	28
39729	positive	growth	30
67770	positive	growth	28
120015	positive	growth	25-30
120015	negative	growth	10
120015	negative	growth	37
120015	negative	growth	41
120015	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120015	obligate aerobe
125438	aerobe	91.984
125439	obligate aerobe	98.325

Spore formation

@ref	Spore formation	Confidence
125438		91.728
125439		93.895

Compound production

9826

Compoundglebomycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120015	NaCl	positive	growth	0-6 %
120015	NaCl		growth	8 %
120015	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120015	16947 ChEBI	citrate	-	carbon source
120015	4853 ChEBI	esculin	-	hydrolysis
120015	606565 ChEBI	hippurate	-	hydrolysis
120015	17632 ChEBI	nitrate	+	reduction
120015	17632 ChEBI	nitrate	-	respiration
120015	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770		glebomycin
120015	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120015	15688 ChEBI	acetoin	-
120015	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120015	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120015	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
120015	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120015	caseinase	-	3.4.21.50
120015	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
120015	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
120015	gamma-glutamyltransferase	-	2.3.2.2
120015	gelatinase	+/-
120015	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120015	lipase	-
68382	lipase (C 14)	-		from API zym
120015	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120015	ornithine decarboxylase	-	4.1.1.17
120015	oxidase	-
120015	phenylalanine ammonia-lyase	-	4.3.1.24
120015	protease	-
68382	trypsin	-	3.4.21.4	from API zym
120015	tryptophan deaminase	-
120015	tween esterase	+
120015	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120015	-	+	-	-	-	+	-	+	-	-	+	+	-	+	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120015	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	-	+	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	+	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	+	-	-	+	+	-	+	-	-	-	+	+	-	-	-	+	-	+	-	+	+	+	+	+	+	+	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9826

Sample typesoil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9826	1	Risk group (German classification) According to TRBA 466
120015	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM981157v1 assembly for Streptomyces glebosus NBRC 13786	contig	GCA_009811575	249580.3	8112115830	249580	79.07
66792	ASM1465623v1 assembly for Streptomyces glebosus JCM 4954	scaffold	GCA_014656235	249580.4	8109957026	249580	62.16

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces hygroscopicus 16S ribosomal RNA gene, partial sequence	U72167	269	1912
20218	Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequence	AB122754	565	249580
20218	Streptomyces hygroscopicus subsp. glebosus gene for 16S rRNA, partial sequence, strain: NBRC 13786	AB184479	1474	249580
20218	Streptomyces glebosus strain NRRL B-3248 16S ribosomal RNA gene, partial sequence	EU170120	1450	249580
20218	Streptomyces hygroscopicus subsp. glebosus 16S rRNA gene, type strain LMG 19950	AJ781386	1481	249580
20218	Streptomyces hygroscopicus subsp. glebosus strain CGMCC 4.1873 16S ribosomal RNA gene, partial sequence	HQ244456	1373	249580
124043	Streptomyces glebosus strain JCM 4954 16S ribosomal RNA gene, partial sequence.	MT760635	1353	249580

GC content

@ref	GC-content (mol%)	Method
67770	71.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM981157v1 assembly for Streptomyces glebosus NBRC 13786
NCBI: GCA_009811575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.33	no
125439	gram_stain	BacteriaNetⓘ	positive	97.77	no
125439	motility	BacteriaNetⓘ	no	92.94	no
125439	spore_formation	BacteriaNetⓘ	yes	93.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces glebosus JCM 4954
NCBI: GCA_014656235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.25	no
125438	anaerobic	anaerobicⓘ	no	97.00	yes
125438	aerobic	aerobicⓘ	yes	91.98	yes
125438	spore-forming	spore-formingⓘ	yes	91.73	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Taxonomic evaluation of the Streptomyces hygroscopicus clade using multilocus sequence analysis and DNA-DNA hybridization, validating the MLSA scheme for systematics of the whole genus.	Rong X, Huang Y	Syst Appl Microbiol	10.1016/j.syapm.2011.10.004	2011
Phylogeny	Description of Streptomyces explomaris sp. nov., isolated from the coastal soil rhizosphere of Juniperus excelsa and reclassification of Streptomyces libani as a later heterotypic synonym of Streptomyces nigrescens.	Shu W, Ruckert-Reed C, Gromyko O, Tistechok S, Kalinowski J, Luzhetskyy A, Wittmann C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006711	2025
	Genomic and Phenotypic Characterization of Streptomyces sirii sp. nov., Amicetin-Producing Actinobacteria Isolated from Bamboo Rhizospheric Soil.	Zakalyukina YV, Alferova VA, Nikandrova AA, Kiriy AR, Chernyshova AP, Kabilov MR, Baturina OA, Biryukov MV, Sergiev PV, Lukianov DA.	Microorganisms	10.3390/microorganisms12122628	2024

References

#9826	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40823
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39729	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#120015	Collection of Institut Pasteur ; Curators of the CIP; CIP 106832
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces platensis (DSM 40823, ATCC 14607, CGMCC 4.1873)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009811575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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