Name: Streptomyces hawaiiensis DSM 40042
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15290

Type strain:

Species: Streptomyces hawaiiensis

Culture col. no.: DSM 40042, ATCC 12236, ATCC 19771, CBS 509.68, IFO 12784, ISP 5042, KCC S-0172, KCC S-0585, NBRC 12784, NCIB 9410, RIA 1051, JCM 4172, BCRC 13653, CBS 164.64, IFM 1071, IMET 43082, JCM 4585, LMG 5975, NCIMB 9410, NRRL B-1988, PCM 2315, VKM Ac-1761

Strain history: KCC S-0172 <-- IFM 1071 <-- Bristol Labs.; 678506 (A8506).

NCBI tax ID(s): 67305 (species)

SI-ID 13327

LMG 5975, ATCC 12236, ATCC 19771, DSM 40042, IFO 12784, IMET 43082, JCM 4172, JCM 4585, NCIB 9410, CBS 16464, CCRC 13653, NCIMB 9410, NRRL B-1988, VKM Ac-1761, CBS 509.68, CBS 164.64, NBRC 12784, BCRC 13653, NCIM 2627

Section

Streptomyces hawaiiensis DSM 40042 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces hawaiiensis**
	Full Scientific Name (LPSN)	Streptomyces hawaiiensis Cron et al. 1956 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.051

[Ref.: #19393]	Colony color	Yellow/brown
[Ref.: #19393]	Incubation period	10-14 days
[Ref.: #19393]	Cultivation medium used	ISP 2

[Ref.: #19393]	Colony color	Brown
[Ref.: #19393]	Incubation period	10-14 days
[Ref.: #19393]	Cultivation medium used	ISP 3

[Ref.: #19393]	Colony color	Brown
[Ref.: #19393]	Incubation period	10-14 days
[Ref.: #19393]	Cultivation medium used	ISP 4

[Ref.: #19393]	Colony color	Brown
[Ref.: #19393]	Incubation period	10-14 days
[Ref.: #19393]	Cultivation medium used	ISP 5

[Ref.: #19393]	Multicellular complex forming ability	yes
[Ref.: #19393]	Multicellular complex name	Aerial Mycelium
[Ref.: #19393]	Multicellular complex color	Blue/Grey
[Ref.: #19393]	Medium Name (multicellularity)	ISP 2

[Ref.: #19393]	Multicellular complex forming ability	yes
[Ref.: #19393]	Multicellular complex name	Aerial Mycelium
[Ref.: #19393]	Multicellular complex color	Grey
[Ref.: #19393]	Medium Name (multicellularity)	ISP 3

[Ref.: #19393]	Multicellular complex forming ability	yes
[Ref.: #19393]	Multicellular complex name	Aerial Mycelium
[Ref.: #19393]	Multicellular complex color	Blue/Grey
[Ref.: #19393]	Medium Name (multicellularity)	ISP 4

[Ref.: #19393]	Multicellular complex forming ability	yes
[Ref.: #19393]	Multicellular complex name	Aerial Mycelium
[Ref.: #19393]	Multicellular complex color	White
[Ref.: #19393]	Medium Name (multicellularity)	ISP 5

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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[Ref.: #19393]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9121]	growth	28 °C
[Ref.: #19393]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9121]	Temperature range	mesophilic
[Ref.: #19393]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19393]	Spore description	Formation of spore chains: spira, spore surface: spiny
[Ref.: #19393]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9121]	Name of produced compound	bryamycin
[Ref.: #20216]	Name of produced compound	Bryamycin = Thiostrepton

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19393]		NaCl		maximum	5	%

[Ref.: #19393]	Name of tolerated compound	Lysozyme
[Ref.: #19393]	Tolerance percentage	1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19393]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19393]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19393]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19393]	mannitol ChEBI	+
[Ref.: #19393]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19393]	raffinose ChEBI	+
[Ref.: #19393]	rhamnose ChEBI	+
[Ref.: #19393]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19393]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	bryamycin	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19393]	259	+	-	-	-	-	-	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9121]	Sample type/isolated from	soil
[Ref.: #9121]	Geographic location (country and/or sea, region)	Hawaii
[Ref.: #9121]	Country	USA
[Ref.: #9121]	Country ISO 3 Code	USA
[Ref.: #9121]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	HI
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9121]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19393]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces hawaiiensis partial 16S rRNA gene, strain ISP 5042	AJ399466	1448	ENA	67305 tax ID	*
[Ref.: #20218]	Streptomyces hawaiiensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4585	D44248	121	ENA	67305 tax ID	*
[Ref.: #20218]	Streptomyces hawaiiensis gene for 16S rRNA, partial sequence, strain: NBRC 12784	AB184143	1477	ENA	67305 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces hawaiiensis ATCC 12236	GCA_004803895	complete	GenBank	67305 tax ID	*
[Ref.: #66792]	Streptomyces hawaiiensis strain ATCC 12236	67305.10	complete	PATRIC	67305 tax ID	*

[Ref.: #67770]

GC-content

72.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces hawaiiensis ATCC 12236 NCBI: GCA_004803895.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces hawaiiensis ATCC 12236 NCBI: GCA_004803895.1
[Ref.: #69480]	motile	no	93.808	no
[Ref.: #69480]	flagellated	no	97.61	no
[Ref.: #69480]	gram-positive	yes	88.966	no
[Ref.: #69480]	anaerobic	no	98.95	no
[Ref.: #69480]	aerobic	yes	92.339	no
[Ref.: #69480]	halophile	no	93.237	no
[Ref.: #69480]	spore-forming	yes	96.307	yes
[Ref.: #69480]	glucose-util	yes	89.396	no
[Ref.: #69480]	thermophile	no	99.045	no
[Ref.: #69480]	glucose-ferment	no	89.534	no

Availability in culture collections External links

[Ref.: #9121]

Culture collection no.

DSM 40042, ATCC 12236, ATCC 19771, CBS 509.68, IFO 12784, ISP 5042, KCC S-0172, KCC S-0585, NBRC 12784, NCIB 9410, RIA 1051, JCM 4172, BCRC 13653, CBS 164.64, IFM 1071, IMET 43082, JCM 4585, LMG 5975, NCIMB 9410, NRRL B-1988, PCM 2315, VKM Ac-1761

[Ref.: #84384]

SI-ID 13327

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces jeddahensis sp. nov., an oleaginous bacterium isolated from desert soil.	Rottig A, Atasayar E, Meier-Kolthoff JP, Sproer C, Schumann P, Schauer J, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001839	2017	*

References

#9121

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40042

#19393

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84384

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13327.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces hawaiiensis ATCC 12236

Streptomyces hawaiiensis ATCC 12236

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