Name: Streptomyces griseorubiginosus DSM 40469
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15279

Type strain:

Species: Streptomyces griseorubiginosus

Culture col. no.: DSM 40469, ATCC 23627, ATCC 25459, CBS 692.69, IFO 13047, INA 7712, ISP 5469, NBRC 13047, RIA 1239, JCM 4481, BCRC 12124, CGMCC 4.1766, NRRL B-12384, VKM Ac-1203

Strain history: KCC S-0481 <-- IFO 13047 <-- SAJ <-- ISP 5469 <-- INA 7712.

NCBI tax ID(s): 67304 (species)

SI-ID 38134

ATCC 23627, ATCC 25459, IFO 13047, DSM 40469, JCM 4481, CCRC 12124, NRRL B-12384, VKM Ac-1203, CBS 692.69, NBRC 13047, LMG 19941, BCRC 12124, CGMCC 4.1766

Other strains from Streptomyces griseorubiginosus

Section

Streptomyces griseorubiginosus DSM 40469 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces griseorubiginosus**
	Full Scientific Name (LPSN)	Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

	Synonym	Streptomyces phaeoviridis
	Synonym	Streptomyces phaeopurpureus
	Synonym	"Actinomyces* griseorubiginosus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.727

[Ref.: #19460]	Colony color	Wine red
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 2

[Ref.: #19460]	Colony color	Carmine red
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 3

[Ref.: #19460]	Colony color	Black red
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 4

[Ref.: #19460]	Colony color	Brown beige
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 5

[Ref.: #19460]	Colony color	Brown beige
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 6

[Ref.: #19460]	Colony color	Brown beige
[Ref.: #19460]	Incubation period	10-14 days
[Ref.: #19460]	Cultivation medium used	ISP 7

[Ref.: #19460]	Multicellular complex forming ability	yes
[Ref.: #19460]	Multicellular complex name	Aerial Mycelium
[Ref.: #19460]	Multicellular complex color	Light grey
[Ref.: #19460]	Medium Name (multicellularity)	ISP 2

[Ref.: #19460]	Multicellular complex forming ability	yes
[Ref.: #19460]	Multicellular complex name	Aerial Mycelium
[Ref.: #19460]	Multicellular complex color	Light grey
[Ref.: #19460]	Medium Name (multicellularity)	ISP 3

[Ref.: #19460]	Multicellular complex forming ability	yes
[Ref.: #19460]	Multicellular complex name	Aerial Mycelium
[Ref.: #19460]	Multicellular complex color	Light grey
[Ref.: #19460]	Medium Name (multicellularity)	ISP 4

[Ref.: #19460]	Multicellular complex forming ability	no
[Ref.: #19460]	Medium Name (multicellularity)	ISP 5

[Ref.: #19460]	Multicellular complex forming ability	no
[Ref.: #19460]	Medium Name (multicellularity)	ISP 6

[Ref.: #19460]	Multicellular complex forming ability	no
[Ref.: #19460]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9564]	growth	28 °C
[Ref.: #19460]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9564]	Temperature range	mesophilic
[Ref.: #19460]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19460]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19460]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19460]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19460]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19460]	mannitol ChEBI	+
[Ref.: #19460]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19460]	raffinose ChEBI	+
[Ref.: #19460]	rhamnose ChEBI	+
[Ref.: #19460]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19460]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19460]	321	+	+	+	+	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19460]	366	not determinedn.d.	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9564]	Sample type/isolated from	soil
[Ref.: #9564]	Country	USSR
[Ref.: #9564]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil (podzol)
[Ref.: #67770]	Geographic location (country and/or sea, region)	Moscow
[Ref.: #67770]	Country	USSR
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9564]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19460]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseorubiginosus strain AS 4.1766 16S ribosomal RNA gene, partial sequence	FJ405905	1376	ENA	67304 tax ID
[Ref.: #20218]	Streptomyces griseorubiginosus partial 16S rRNA gene, strain ISP 5469	AJ399488	1449	ENA	67304 tax ID	*
[Ref.: #20218]	Streptomyces griseorubiginosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4481	D44176	120	ENA	67304 tax ID	*
[Ref.: #20218]	Streptomyces griseorubiginosus 16S rRNA gene, type strain LMG 19941	AJ781339	1478	ENA	67304 tax ID	*
[Ref.: #20218]	Streptomyces griseorubiginosus gene for 16S rRNA, partial sequence, strain: NBRC 13047	AB184276	1481	ENA	67304 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseorubiginosus DSM 40469	GCA_001514195	scaffold	GenBank	67304 tax ID
[Ref.: #66792]	Streptomyces griseorubiginosus strain DSM 40469	67304.3	wgs	PATRIC	67304 tax ID	*
[Ref.: #66792]	Streptomyces griseorubiginosus DSM 40469	2775507132	draft	JGI IMG/M	67304 tax ID	*

[Ref.: #9564]	GC-content	70.9 mol%	sequence analysis
[Ref.: #67770]	GC-content	70.9 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72.1 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces griseorubiginosus strain DSM 40469 PATRIC: 67304.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces griseorubiginosus strain DSM 40469 PATRIC: 67304.3
[Ref.: #69480]	gram-positive	yes	90.165	no
[Ref.: #69480]	anaerobic	no	99.203	no
[Ref.: #69480]	halophile	no	95.418	no
[Ref.: #69480]	spore-forming	yes	93.582	no
[Ref.: #69480]	glucose-util	yes	90.168	yes
[Ref.: #69480]	thermophile	no	99.545	no
[Ref.: #69480]	flagellated	no	97.75	no
[Ref.: #69480]	motile	no	94.61	no
[Ref.: #69480]	aerobic	yes	93.251	no
[Ref.: #69480]	glucose-ferment	no	90.181	no

Availability in culture collections External links

[Ref.: #9564]

Culture collection no.

DSM 40469, ATCC 23627, ATCC 25459, CBS 692.69, IFO 13047, INA 7712, ISP 5469, NBRC 13047, RIA 1239, JCM 4481, BCRC 12124, CGMCC 4.1766, NRRL B-12384, VKM Ac-1203

[Ref.: #84373]

SI-ID 38134

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy, purification and chemical characterization of four bioactive compounds from new Streptomyces sp. TN256 strain.	Smaoui S, Mathieu F, Elleuch L, Coppel Y, Merlina G, Karray-Rebai I, Mellouli L	World J Microbiol Biotechnol	10.1007/s11274-011-0872-6	2011	*

References

#9564

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40469

#19460

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84373

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38134.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces griseorubiginosus strain DSM 40469

Streptomyces griseorubiginosus strain DSM 40469

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