Streptomyces griseorubiginosus DSM 40469 is a bacterium that builds an aerial mycelium and was isolated from soil.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces griseorubiginosus |
| Full scientific name Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) |
| Synonyms (3) |
| BacDive ID | Other strains from Streptomyces griseorubiginosus (7) | Type strain |
|---|---|---|
| 15469 | S. griseorubiginosus DSM 40125, ATCC 23946, CBS 930.68, ETH 24482, ... | |
| 15470 | S. griseorubiginosus 503, DSM 40285, ATCC 23947, CBS 931.68, IFO ... | |
| 127966 | S. griseorubiginosus SF004032, | |
| 127967 | S. griseorubiginosus SF004048, | |
| 127968 | S. griseorubiginosus SF002263, | |
| 127969 | S. griseorubiginosus SF001074, | |
| 127970 | S. griseorubiginosus SF001075, |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9564 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19460 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19460 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19460 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19460 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19460 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19460 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 9564 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | Medium recipe at MediaDive | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 96.583 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19460 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 19460 | 62968 ChEBI | cellulose | + | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 19460 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 19460 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 19460 | 29864 ChEBI | mannitol | + | ||
| 19460 | 17268 ChEBI | myo-inositol | + | ||
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 19460 | 16634 ChEBI | raffinose | + | ||
| 19460 | 26546 ChEBI | rhamnose | + | ||
| 19460 | 17992 ChEBI | sucrose | + | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 19460 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | + | from API zym | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM151419v1 assembly for Streptomyces griseorubiginosus DSM 40469 | scaffold | 67304 | 66.46 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces griseorubiginosus partial 16S rRNA gene, strain ISP 5469 | AJ399488 | 1449 | 67304 | ||
| 20218 | Streptomyces griseorubiginosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4481 | D44176 | 120 | 67304 | ||
| 20218 | Streptomyces griseorubiginosus 16S rRNA gene, type strain LMG 19941 | AJ781339 | 1478 | 67304 | ||
| 20218 | Streptomyces griseorubiginosus gene for 16S rRNA, partial sequence, strain: NBRC 13047 | AB184276 | 1481 | 67304 | ||
| 67770 | Streptomyces griseorubiginosus strain AS 4.1766 16S ribosomal RNA gene, partial sequence | FJ405905 | 1376 | 67304 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 96.58 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.05 | no |
| 125439 | motility | BacteriaNetⓘ | no | 94.32 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 90.68 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 85.78 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.79 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 90.60 | no |
| 125438 | aerobic | aerobicⓘ | yes | 87.64 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 88.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Molecular, chemical and biological screening of soil actinomycete isolates in seeking bioactive peptide metabolites. | Hamedi J, Imanparast S, Mohammadipanah F. | Iran J Microbiol | 2015 | |||
| Production and Extraction of Red Bioactive Pigment from Streptomyces griseorubiginosus and Formulation of Bio-Lip Balm. | Vignesh S, Anandu PM, Gopuraj Varrier GS, Brijmohan N, Gokula Krishnan G, Ganesh SK, Nair SR, Mohanasrinivasan V, Devi CS. | Indian J Microbiol | 10.1007/s12088-024-01323-5 | 2025 | ||
| Promoting plant resilience against stress by engineering root microenvironment with Streptomyces inoculants. | Wang Z, Solanki MK, Kumar A, Solanki AC, Pang F, Ba ZX, Niu JQ, Ren ZX. | Microbiol Res | 10.1016/j.micres.2023.127509 | 2023 | ||
| Induction of New Aromatic Polyketides from the Marine Actinobacterium Streptomyces griseorubiginosus through an OSMAC Approach. | Martin-Aragon VR, Millan FR, Cuadrado C, Daranas AH, Medarde AF, Lopez JMS. | Mar Drugs | 10.3390/md21100526 | 2023 | ||
| Identification and Characterization of a Multifunctional Biocontrol Agent, Streptomyces griseorubiginosus LJS06, Against Cucumber Anthracnose. | Chai CH, Hong CF, Huang JW. | Front Microbiol | 10.3389/fmicb.2022.923276 | 2022 | ||
| Genetics | Genome Characteristics Reveal the Biocontrol Potential of Actinobacteria Isolated From Sugarcane Rhizosphere. | Wang Z, Solanki MK, Yu ZX, Anas M, Dong DF, Xing YX, Malviya MK, Pang F, Li YR. | Front Microbiol | 10.3389/fmicb.2021.797889 | 2021 | |
| Phylogeny | Streptomyces phaeopurpureus Shinobu 1957 (Approved Lists 1980) and Streptomyces griseorubiginosus (Ryabova and Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980) are heterotypic subjective synonyms. | Kampfer P, Ruckert C, Blom J, Goesmann A, Wink J, Kalinowski J, Glaeser SP. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002110 | 2017 | |
| Insights into the antibacterial, antioxidant, and fabric colorant applications by pigment-producing actinomycetes from Sof-Umer cave rocks and sediments. | Girma D, Feyisa A, Chaluma E, Mulu D, Geta S, Tafesse M. | BMC Microbiol | 10.1186/s12866-025-03959-9 | 2025 | ||
| Interference with sexual mating of Sporisorium scitamineum by verrucarin A isolated from Paramyrothecium sp. | He R, Xie H, Xie J, Wang B, Li Z, Liu X, Fang W. | Mycology | 10.1080/21501203.2024.2426480 | 2025 | ||
| Phylogeny | Comparative microbiome diversity in root-nodules of three Desmodium species used in push-pull cropping system. | Adan IH, Asudi GO, Niassy S, Jalloh AA, Mutua JM, Chidawanyika F, Khamis F, Khan Z, Subramanian S, Dubois T, Mutyambai DM. | Front Microbiol | 10.3389/fmicb.2024.1395811 | 2024 | |
| [Isolation and Identification of Antagonistic Endophytic Actinomycetes Against Root Rot Disease in Ligusticum chuanxiong]. | He DM, Lin CC, Yan ZY, Li JS, Wang H, Liu W, Ma YF. | Zhong Yao Cai | 2016 | |||
| Phylogeny | Variation in phylogenetic tendencies of contiguous riboswitches. | Morales N, Merino E. | Microb Genom | 10.1099/mgen.0.001496 | 2025 | |
| Enzymology | Metabolic engineering of methylotrophic Pichia pastoris for the production of beta-alanine. | Miao L, Li Y, Zhu T. | Bioresour Bioprocess | 10.1186/s40643-021-00444-9 | 2021 | |
| Enzymology | A Rhizobacterium, Streptomyces albulus Z1-04-02, Displays Antifungal Activity against Sclerotium Rot in Mungbean. | Ruangwong OU, Kunasakdakul K, Chankaew S, Pitija K, Sunpapao A. | Plants (Basel) | 10.3390/plants11192607 | 2022 | |
| Pathogenicity | Promomycin, a polyether promoting antibiotic production in Streptomyces spp. | Amano S, Morota T, Kano YK, Narita H, Hashidzume T, Yamamoto S, Mizutani K, Sakuda S, Furihata K, Takano-Shiratori H, Takano H, Beppu T, Ueda K. | J Antibiot (Tokyo) | 10.1038/ja.2010.68 | 2010 | |
| Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism. | Nakashima Y, Kawakami A, Ogasawara Y, Maeki M, Tokeshi M, Dairi T, Morita H. | Nat Commun | 10.1038/s41467-023-40232-x | 2023 | ||
| Effective bioremediation of clarithromycin and diclofenac in wastewater by microbes and Arundo donax L. | Ercoli L, Rossetto R, Di Giorgi S, Raffaelli A, Nuti M, Pellegrino E. | Environ Sci Pollut Res Int | 10.1007/s11356-023-27660-4 | 2023 | ||
| Enzymology | Isolation and characterization of endophytic streptomycete antagonists of Fusarium wilt pathogen from surface-sterilized banana roots. | Cao L, Qiu Z, You J, Tan H, Zhou S. | FEMS Microbiol Lett | 10.1016/j.femsle.2005.05.006 | 2005 | |
| Genetics | Genome mining of novel rubiginones from Streptomyces sp. CB02414 and characterization of the post-PKS modification steps in rubiginone biosynthesis. | Zhang J, Sun Y, Wang Y, Chen X, Xue L, Zhang J, Zhu X, Duan Y, Yan X. | Microb Cell Fact | 10.1186/s12934-021-01681-5 | 2021 | |
| Genetics | Complete genome analysis of sugarcane root associated endophytic diazotroph Pseudomonas aeruginosa DJ06 revealing versatile molecular mechanism involved in sugarcane development. | Guo DJ, Singh P, Yang B, Singh RK, Verma KK, Sharma A, Khan Q, Qin Y, Chen TS, Song XP, Zhang BQ, Li DP, Li YR. | Front Microbiol | 10.3389/fmicb.2023.1096754 | 2023 | |
| Metabolism | Accumulation of poly (3-hydroxybutyric acid) by some soil Streptomyces. | Manna A, Banerjee R, Paul AK. | Curr Microbiol | 10.1007/s002849900437 | 1999 | |
| Enzymology | Arylsulfatase from Streptomyces griseorubiginosus S980-14. | Ueki T, Sawada Y, Fukagawa Y, Oki T. | Biosci Biotechnol Biochem | 10.1271/bbb.59.1062 | 1995 | |
| Metabolism | K1115 A, a new anthraquinone derivative that inhibits the binding of activator protein-1 (AP-1) to its recognition sites. I. Biological activities. | Goto M, Masegi M, Yamauchi T, Chiba K, Kuboi Y, Harada K, Naruse N. | J Antibiot (Tokyo) | 10.7164/antibiotics.51.539 | 1998 | |
| Metabolism | Biphenomycin C, a precursor of biphenomycin A in mixed culture. | Ezaki M, Shigematsu N, Yamashita M, Komori T, Umehara K, Imanaka H. | J Antibiot (Tokyo) | 10.7164/antibiotics.46.135 | 1993 | |
| Chemical and biological properties of rubiginone, a complex of new antibiotics with vincristine-cytotoxicity potentiating activity. | Oka M, Kamei H, Hamagishi Y, Tomita K, Miyaki T, Konishi M, Oki T. | J Antibiot (Tokyo) | 10.7164/antibiotics.43.967 | 1990 | ||
| Phylogeny | Biphenomycins A and B, novel peptide antibiotics. I. Taxonomy, fermentation, isolation and characterization. | Ezaki M, Iwami M, Yamashita M, Hashimoto S, Komori T, Umehara K, Mine Y, Kohsaka M, Aoki H, Imanaka H. | J Antibiot (Tokyo) | 10.7164/antibiotics.38.1453 | 1985 | |
| Metabolism | Production of cinerubins by a Streptomyces griseorubiginosus strain. | David L, Duteurtre M, Kergomard A, Kergomard G, Scanzi E, Staron T. | J Antibiot (Tokyo) | 10.7164/antibiotics.33.49 | 1980 | |
| Metabolism | Biphenomycin A production by a mixed culture. | Ezaki M, Iwami M, Yamashita M, Komori T, Umehara K, Imanaka H. | Appl Environ Microbiol | 10.1128/aem.58.12.3879-3882.1992 | 1992 | |
| Reductiomycin, a new antibiotic. I. Taxonomy, fermentation, isolation, characterization and biological activities. | Shimizu K, Tamura G. | J Antibiot (Tokyo) | 10.7164/antibiotics.34.649 | 1981 | ||
| Biological Control Agents Against Fusarium Wilt of Banana. | Bubici G, Kaushal M, Prigigallo MI, Gomez-Lama Cabanas C, Mercado-Blanco J. | Front Microbiol | 10.3389/fmicb.2019.00616 | 2019 | ||
| Phylogeny | Taxonomy, purification and chemical characterization of four bioactive compounds from new Streptomyces sp. TN256 strain. | Smaoui S, Mathieu F, Elleuch L, Coppel Y, Merlina G, Karray-Rebai I, Mellouli L | World J Microbiol Biotechnol | 10.1007/s11274-011-0872-6 | 2011 |
| #9564 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40469 |
| #19460 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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