Name: Streptomyces griseoruber H-4650
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15276

Type strain:

Species: Streptomyces griseoruber

Strain Designation: H-4650

Culture col. no.: DSM 40281, ATCC 23919, CBS 903.68, IFO 12873, ISP 5281, KCC S-0200, KCC S-0642, NBRC 12873, RIA 1195, JCM 4200, BCRC 11826, CCUG 11117, CGMCC 4.1417, HAMBI 1051, IFM 11218, JCM 4642, LMG 19325, NRRL B-1818, VKM Ac-1900

Strain history: KCC S-0200 <-- H. Yonehara (IAM 0110) <-- IID H-4650.

NCBI tax ID(s): 1943 (species)

SI-ID 13341

LMG 19325, ATCC 23919, CCRC 11826, CCUG 11117, DSM 40281, IFO 12873, JCM 4200, JCM 4642, NRRL B-1818, VKM Ac-1900, CBS 903.68, AS 4.1417, NBRC 12873, BCRC 11826, HAMBI 1051, CGMCC 4.1417

Other strains from Streptomyces griseoruber

S. griseoruber DSM 40769, LBG A 3079, ETH 24200
S. griseoruber DSM 41175, IMRU 3843

Section

Streptomyces griseoruber H-4650 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces griseoruber**
	Full Scientific Name (LPSN)	Streptomyces griseoruber Yamaguchi and Saburi 1955 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.961

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9432]

Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9432]	growth	28 °C
[Ref.: #18578]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9432]	Temperature range	mesophilic
[Ref.: #18578]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9432]

Name of produced compound

antitrichomonas factor

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18578]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18578]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18578]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18578]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18578]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18578]	mannitol ChEBI	-
[Ref.: #18578]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18578]	raffinose ChEBI	-
[Ref.: #18578]	rhamnose ChEBI	+/-
[Ref.: #18578]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18578]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18578]	136	+	-	-	-	+	+	-	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9432]	Sample type/isolated from	soil
[Ref.: #9432]	Country	Japan
[Ref.: #9432]	Country ISO 3 Code	JPN
[Ref.: #9432]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY094585 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	18
Soil Samples	433
Animal Samples	71
Plant Samples	350
Total Samples	872

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18578]	Biosafety level	1	German classification
[Ref.: #9432]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces griseoruber strain DSM 40281 16S ribosomal RNA gene, partial sequence	GU383130	779	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber 16S ribosomal RNA gene, partial sequence	AY094585	1436	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber gene for 16S rRNA, partial sequence	AB122763	564	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber strain JCM 4642 16S ribosomal RNA gene, partial sequence	AY999750	1419	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber gene for 16S ribosomal RNA, partial sequence, strain: JCM 4642	D44282	120	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber gene for 16S rRNA, partial sequence, strain: NBRC 12873	AB184209	1473	ENA	1943 tax ID	*
[Ref.: #20218]	Streptomyces griseoruber strain NRRL B-1818 16S ribosomal RNA gene, partial sequence	AY999723	1420	ENA	1943 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseoruber NRRL B-1818	GCA_001418585	scaffold	GenBank	1943 tax ID
[Ref.: #67770]	Streptomyces griseoruber DSM 40281	GCA_001514205	scaffold	GenBank	1943 tax ID
[Ref.: #66792]	Streptomyces griseoruber strain DSM 40281	1943.4	wgs	PATRIC	1943 tax ID	*
[Ref.: #66792]	Streptomyces griseoruber DSM 40281	2802429330	draft	JGI IMG/M	1943 tax ID	*

[Ref.: #67770]

GC-content

71.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces griseoruber DSM 40281 NCBI: GCA_001514205.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces griseoruber strain DSM 40281 PATRIC: 1943.4
[Ref.: #69480]	motile	no	94.547	no
[Ref.: #69480]	gram-positive	yes	86.664	no
[Ref.: #69480]	anaerobic	no	99.127	no
[Ref.: #69480]	aerobic	yes	90.758	no
[Ref.: #69480]	halophile	no	94.675	no
[Ref.: #69480]	spore-forming	yes	94.315	no
[Ref.: #69480]	glucose-util	yes	88.787	yes
[Ref.: #69480]	flagellated	no	97.989	no
[Ref.: #69480]	thermophile	no	97.933	yes
[Ref.: #69480]	glucose-ferment	no	89.995	no

Availability in culture collections External links

[Ref.: #9432]

Culture collection no.

DSM 40281, ATCC 23919, CBS 903.68, IFO 12873, ISP 5281, KCC S-0200, KCC S-0642, NBRC 12873, RIA 1195, JCM 4200, BCRC 11826, CCUG 11117, CGMCC 4.1417, HAMBI 1051, IFM 11218, JCM 4642, LMG 19325, NRRL B-1818, VKM Ac-1900

[Ref.: #84370]

SI-ID 13341

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Studies on the production of actinomycin-D by Streptomyces griseoruber--a novel source.	Praveen V, Tripathi CK	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02689.x	2009	*
Phylogeny	Streptomyces coacervatus sp. nov., isolated from the intestinal tract of Armadillidium vulgare.	Shibazaki A, Omoto Y, Kudo T, Yaguchi T, Saito A, Ando A, Mikami Y, Gonoi T	Int J Syst Evol Microbiol	10.1099/ijs.0.019091-0	2010	*

References

#9432

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40281

#18578

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84370

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13341.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces griseoruber DSM 40281

Streptomyces griseoruber strain DSM 40281

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