Name: Streptomyces griseoincarnatus DSM 40274
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15267

Type strain:

Species: Streptomyces griseoincarnatus

Culture col. no.: DSM 40274, ATCC 23623, ATCC 23917, CBS 838.68, IFO 12871, INA 9673/55, ISP 5274, NBRC 12871, RIA 1192, JCM 4381, BCRC 11481, CGMCC 4.1409, KCTC 19071, LMG 19316, NCIMB 9825, NRRL B-5313, VTT E-022184

Strain history: KCC S-0381 <-- IFO 12871 <-- SAJ <-- ISP 5274 <-- INA 9673/55.

NCBI tax ID(s): 29305 (species)

SI-ID 14104

LMG 19316, ATCC 23623, ATCC 23917, CCRC 11481, DSM 40274, IFO 12871, JCM 4381, NCIMB 9825, NRRL B-5313, AS 4.1409, NBRC 12871, BCRC 11481, KCTC 19071, NCIB 9825, CGMCC 4.1409, VTT E-022184, CBS 838.68

Special Collections

Other strains from Streptomyces griseoincarnatus

Section

Streptomyces griseoincarnatus DSM 40274 is a mesophilic, Gram-negative bacterium that builds an aerial mycelium and was isolated from soil.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces griseoincarnatus**
	Full Scientific Name (LPSN)	Streptomyces griseoincarnatus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

	Synonym	Streptomyces variabilis
	Synonym	Streptomyces erythrogriseus
	Synonym	"Actinomyces* variabilis"*
	Synonym	"Actinomyces* griseoincarnatus"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.75

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 2

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 3

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 4

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 5

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 6

[Ref.: #19430]	Colony color	Black red
[Ref.: #19430]	Incubation period	10-14 days
[Ref.: #19430]	Cultivation medium used	ISP 7

[Ref.: #19430]	Multicellular complex forming ability	yes
[Ref.: #19430]	Multicellular complex name	Aerial Mycelium
[Ref.: #19430]	Multicellular complex color	Concrete grey
[Ref.: #19430]	Medium Name (multicellularity)	ISP 2

[Ref.: #19430]	Multicellular complex forming ability	yes
[Ref.: #19430]	Multicellular complex name	Aerial Mycelium
[Ref.: #19430]	Multicellular complex color	Cocrete grey
[Ref.: #19430]	Medium Name (multicellularity)	ISP 3

[Ref.: #19430]	Multicellular complex forming ability	yes
[Ref.: #19430]	Multicellular complex name	Aerial Mycelium
[Ref.: #19430]	Multicellular complex color	Concrete grey
[Ref.: #19430]	Medium Name (multicellularity)	ISP 4

[Ref.: #19430]	Multicellular complex forming ability	yes
[Ref.: #19430]	Multicellular complex name	Aerial Mycelium
[Ref.: #19430]	Multicellular complex color	Ivory
[Ref.: #19430]	Medium Name (multicellularity)	ISP 5

[Ref.: #19430]	Multicellular complex forming ability	no
[Ref.: #19430]	Medium Name (multicellularity)	ISP 6

[Ref.: #19430]	Multicellular complex forming ability	yes
[Ref.: #19430]	Multicellular complex name	Aerial Mycelium
[Ref.: #19430]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9425]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9425]

Culture medium growth

[Ref.: #9425]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9425]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 2

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 3

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 4

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 5

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 6

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

[Ref.: #19430]

Culture medium

ISP 7

[Ref.: #19430]

Culture medium growth

[Ref.: #19430]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9425]	growth	28 °C
[Ref.: #19430]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19430]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19430]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19430]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19430]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19430]	mannitol ChEBI	+
[Ref.: #19430]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19430]	raffinose ChEBI	+
[Ref.: #19430]	rhamnose ChEBI	+
[Ref.: #19430]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19430]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19430]	293	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19430]	356	not determinedn.d.	+	+	+	-	+	+	-	+	-	+	-	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9425]	Sample type/isolated from	soil
[Ref.: #9425]	Country	USSR
[Ref.: #9425]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ781321 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	30
Animal Samples	18
Plant Samples	2
Total Samples	50

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9425]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19430]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces griseoincarnatus strain JCM 4381 16S ribosomal RNA gene, partial sequence	AY999749	1413	GenBank ENA	29305 tax ID	*
[Ref.: #20218]	Streptomyces griseoincarnatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4381	D44096	121	GenBank ENA	29305 tax ID	*
[Ref.: #20218]	Streptomyces griseoincarnatus 16S rRNA gene, type strain LMG 19316	AJ781321	1480	GenBank ENA	29305 tax ID	*
[Ref.: #20218]	Streptomyces griseoincarnatus gene for 16S rRNA, partial sequence, strain: NBRC 12871	AB184207	1479	GenBank ENA	29305 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseoincarnatus JCM 4381	GCA_014649575	scaffold	GenBank ENA	29305 tax ID
[Ref.: #66792]	Streptomyces griseoincarnatus strain JCM 4381	29305.3	wgs	PATRIC	29305 tax ID	*

[Ref.: #67770]

GC-content

72.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Escherichia coli strain NCTC9033 PATRIC: 562.39514
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Escherichia coli NCTC9033 NCBI: GCA_900635225.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.75	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.956	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	68.512	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.448	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.53	no

Availability in culture collections External links

[Ref.: #9425]

Culture collection no.

DSM 40274, ATCC 23623, ATCC 23917, CBS 838.68, IFO 12871, INA 9673/55, ISP 5274, NBRC 12871, RIA 1192, JCM 4381, BCRC 11481, CGMCC 4.1409, KCTC 19071, LMG 19316, NCIMB 9825, NRRL B-5313, VTT E-022184

[Ref.: #84362]

SI-ID 14104

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces euryhalinus sp. nov., a new actinomycete isolated from a mangrove forest.	Biswas K, Choudhury JD, Mahansaria R, Saha M, Mukherjee J	J Antibiot (Tokyo)	10.1038/ja.2017.3	2017	*
Phylogeny	Streptomyces tunisiensis sp. nov., a novel Streptomyces species with antibacterial activity.	Slama N, Mankai H, Ayed A, Mezhoud K, Rauch C, Lazim H, Barkallah I, Gtari M, Limam F	Antonie Van Leeuwenhoek	10.1007/s10482-013-0086-z	2013	*
Phylogeny	Streptomyces wuyuanensis sp. nov., an actinomycete from soil.	Zhang X, Zhang J, Zheng J, Xin D, Xin Y, Pang H	Int J Syst Evol Microbiol	10.1099/ijs.0.047050-0	2013	*

References

#9425

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40274

#19430

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84362

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14104.1 )

* These data were automatically processed and therefore are not curated

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Escherichia coli strain NCTC9033

Escherichia coli NCTC9033

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