Chromobacterium sp. (CCUG 47308 A)

Name: Chromobacterium sp. (CCUG 47308 A)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 152662

Type strain

Culture col. no. CCUG 47308 A

NCBI tax ID(s) 306190

Special Collections CCUG

Links

CCUG 47308 A is an aerobe, mesophilic prokaryote that was isolated from Sediment containing mine tailings.

aerobe mesophilic

Name and taxonomic classification

SI-ID 110993

CCUG 47308 A

@ref 20215

Last LPSN update 2025-12-16 10:06:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Chromobacteriaceae

Genus Chromobacterium

Full scientific name Chromobacterium Bergonzini 1880 (Approved Lists 1980)

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
57634	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

57634

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68374	35581 ChEBI	indole		from API ID32E
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68374	35581 ChEBI	indole	+	from API ID32E
68369	35581 ChEBI	indole	+	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68382	trypsin	-	3.4.21.4	from API zym
68374	urease	-	3.5.1.5	from API ID32E
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

57634

Fatty acid	Percentage	ECL
C16:1 ω7c	50.4	15.819
C16:0	23.6	16
C18:1 ω7c /12t/9t	7.3	17.824
C12:0	6.2	12
C10:0 3OH	3.1	11.423
C14:0	2.2	14
C15:0	1.6	15
C12:0 3OH	1.5	13.455
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724
C13:0 ISO 2OH	0.6	13.814
C17:1 ω6c	0.5	16.862
C18:0	0.5	18
C17:1 ω8c	0.3	16.792
C11:0	0.3	11
C16:1 ω5c	0.2	15.908
C15:1 ω8c	0.2	14.792
C18:1 ω9c	0.2	17.769
C17:0	0.2	17
Unidentified	0.2	10.475

Metadata FA analysis

@ref

57634

Fatty acid	Percentage	ECL
C16:1 ω7c	50.5	15.819
C16:0	23.7	16
C18:1 ω7c /12t/9t	6.6	17.824
C12:0	6	12
C10:0 3OH	2.9	11.423
C14:0	2.4	14
C15:0	2.1	15
C12:0 3OH	1.5	13.455
C13:0 ISO 2OH	0.7	13.814
C17:1 ω6c	0.7	16.862
C18:2 ω6,9c/C18:0 ANTE	0.6	17.724
C18:0	0.5	18
C17:1 ω8c	0.4	16.792
C11:0	0.4	11
C15:1 ω8c	0.3	14.792
C18:1 ω9c	0.3	17.769
C17:0	0.3	17
Unidentified	0.3	10.47

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
57634	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
57634	+	+	+	+	-	-	-	-	+	-	-	+	+	-	+	+	-	+	+	-	+

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
57634	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
57634	Sediment containing mine tailings	2002-08-12	Boliden	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57634	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47308 A
#68369	Automatically annotated from API 20NE .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Chromobacterium sp. (CCUG 47308 A)

Name and taxonomic classification

Morphology