Streptomyces murinus (DSM 40191, ATCC 23916, CBS 837.68)

Name: Streptomyces murinus (DSM 40191, ATCC 23916, CBS 837.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15266

Type strain

Strain Designation 1068

Culture col. no. DSM 40191 ATCC 23916 CBS 837.68 IFO 12870 ISP 5191 14 more

NCBI tax ID(s) 146922

Special Collections DSMZ JCM KCTC Wink compendium

Links

Streptomyces murinus 1068 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389375

ATCC 23916,IFO 12870,JCM 4276,JCM 4641,CCRC 10483,IMET 42068,NCIMB 9821,NRRL B-5429,VKM Ac-1707,CBS 837.68,CECT 3307,KCTC 9879,NBRC 12870,KACC 20083,BCRC 10483,NCIB 9821,CGMCC 4.1962,DSM 40191

@ref 20215

Last LPSN update 2025-12-16 09:50:33

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces murinus

Full scientific name Streptomyces murinus Frommer 1959 (Approved Lists 1980)

Synonyms (3)

Streptomyces costaricanus
Streptomyces phaeogriseichromatogenes
Streptomyces griseofuscus

BacDive ID	Other strains from **Streptomyces murinus** (2)	Type strain
15416	S. murinus Ital. 1131, DSM 40091, ATCC 19788, CBS 540.68, ... (type strain)
15417	S. murinus C/2-9, DSM 41432, NRRL 8171

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Multimedia

@ref:	9253
multimedia content:	DSM_40191.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40191.jpg
caption:	Medium 987 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9253	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9253	ISP2 MEDIUM (DSMZ Medium 987)		Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9253	positive	growth	28	mesophilic
18555	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125438		91.429

Compound production

@ref	Compound
9253	bundlin A
9253	bundlin B
9253	moldicidin A
9253	pentamycin
9253	bundlin A, B
20216	Bundlin A
20216	Bundlin B
20216	Moldicin A
20216	Pentamycin
20216	Glucose isomerase
67770	Bundlins A and B and moldcidin B;

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18555	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
18555	62968 ChEBI	cellulose	+
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
18555	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18555	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	+	degradation	from API 20E
18555	29864 ChEBI	mannitol	+
18555	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
18555	16634 ChEBI	raffinose	-
18555	26546 ChEBI	rhamnose	-
18555	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18555	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
67770	31639 ChEBI	fungichromin
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
67770	glucose isomerase		5.3.1.18
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18555	+	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18555	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	-	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9253	soil		Japan	JPN	Asia
67770	Soil	Fukushima Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY207605 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	10
Soil Samples	384
Animal Samples	13
Plant Samples	55
Total Samples	462

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9253	1	Risk group (German classification) According to TRBA 466
18555	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1467349v1 assembly for Streptomyces griseofuscus DSM 40191	complete	GCA_014673495	146922.15	8110553263	146922	98.37
67770	ASM71831v1 assembly for Streptomyces griseofuscus NRRL B-5429	contig	GCA_000718315	146922.3	2772190672	146922	30.44

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, strain: JCM 4276	D44041	120	1928
20218	Streptomyces griseofuscus 16S ribosomal RNA gene, partial sequence	AY207605	1491	146922
20218	Streptomyces griseofuscus strain KCTC 9879 16S ribosomal RNA gene, partial sequence	AY999809	1419	146922
20218	Streptomyces griseofuscus gene for 16S rRNA, partial sequence, strain: NBRC 12870	AB184206	1476	146922

GC content

@ref	GC-content (mol%)	Method
67770	71.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces griseofuscus DSM 40191
NCBI: GCA_014673495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.50	no
125439	motility	BacteriaNetⓘ	no	85.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces griseofuscus DSM 40191
NCBI: GCA_014673495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.05	no
125438	anaerobic	anaerobicⓘ	no	96.56	no
125438	aerobic	aerobicⓘ	yes	89.31	no
125438	spore-forming	spore-formingⓘ	yes	91.43	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues.	Lara AC, Corretto E, Kotrbova L, Lorenc F, Petrickova K, Grabic R, Chronakova A.	Microorganisms	10.3390/microorganisms9081547	2021
	Xylose (glucose) isomerase gene from the thermophile Thermus thermophilus: cloning, sequencing, and comparison with other thermostable xylose isomerases.	Dekker K, Yamagata H, Sakaguchi K, Udaka S.	J Bacteriol	10.1128/jb.173.10.3078-3083.1991	1991
Genetics	Characterization and engineering of Streptomyces griseofuscus DSM 40191 as a potential host for heterologous expression of biosynthetic gene clusters.	Gren T, Whitford CM, Mohite OS, Jorgensen TS, Kontou EE, Nielsen JB, Lee SY, Weber T	Sci Rep	10.1038/s41598-021-97571-2	2021
	High-Quality Sequencing, Assembly, and Annotation of the Streptomyces griseofuscus DSM 40191 Genome.	Gren T, Jorgensen TS, Whitford CM, Weber T	Microbiol Resour Announc	10.1128/MRA.01100-20	2020

References

#9253	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40191
#18555	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces murinus (DSM 40191, ATCC 23916, CBS 837.68)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014673495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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