Name: Lysinibacillus fusiformis AMNH 732
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1521

Type strain:

Species: Lysinibacillus fusiformis

Strain Designation: AMNH 732

Culture col. no.: DSM 2898, ATCC 7055, JCM 31033, NRS 350, JCM 12229, BCRC 15907, CCUG 28888, IFO 15717, IFO 3528, KCTC 3454, LMG 9816, NBRC 15717, NBRC 3528, NRRL NRS-350, VTT E-011945, CRBIP 3.1597

Strain history: CIP <- 2009, J.F. Charles, Inst. Pasteur, Paris, France <- 2001, B. Papierok, Inst. Pasteur, Paris, France <- 1998, M.M. Lecadet, Inst. Pasteur, Paris, France <- 1992, H. de Barjac, Inst. Pasteur, Paris, France <- 1978, A.A. Yousten: strain ATCC 7055

NCBI tax ID(s): 28031 (species)

SI-ID 92143

LMG 9816, ATCC 7055, DSM 2898, IFO 3528, CCUG 28888, NRRL NRS-350, IFO 15717, KCTC 1193, KCTC 3454, NBRC 15717, NBRC 3528, BCRC 15907, CCRC 15907, JCM 12229, KACC 10903, CGMCC 1.2837, CGMCC 1.3602, VTT E-011945

Other strains from Lysinibacillus fusiformis

L. fusiformis 24D, DSM 493, ATCC 7054, NCTC 2608, ...
L. fusiformis ES2-W3a1, DSM 30621
L. fusiformis 1593, CIP 106827, IEBC S05.001, ...
L. fusiformis CCUG 60335
L. fusiformis CCUG 70528
L. fusiformis H1k, DSM 103230

Section

Lysinibacillus fusiformis AMNH 732 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil.

Gram-positive
motile
rod-shaped
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Lysinibacillus*
	Species	**Lysinibacillus fusiformis**
	Full Scientific Name (LPSN)	Lysinibacillus fusiformis (Priest et al. 1989 ex Meyer and Gottheil 1901) Ahmed et al. 2007

Synonym

Bacillus fusiformis

Information on morphological and physiological properties Morphology

[Ref.: #23066]	Gram stain	positive

[Ref.: #23066]	Cell shape	rod-shaped

[Ref.: #23066]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1163]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1163]

Culture medium growth

[Ref.: #1163]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1163]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1163]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #1163]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23066]	Spore description	ellipsoidal or spherical,terminal,in a swollen sporangium
[Ref.: #23066]	Type of spore	endospore
[Ref.: #23066]	Ability of spore formation	yes

[Ref.: #1163]

Name of produced compound

steroids

[Ref.: #23066]	Murein short key	A11.31
[Ref.: #23066]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122731]	glucose ChEBI	-	fermentation
[Ref.: #122731]	inuline ChEBI	-	fermentation
[Ref.: #122731]	lactose ChEBI	-	fermentation
[Ref.: #23066]	nitrate ChEBI	-	reduction
[Ref.: #122731]	nitrate ChEBI	-	reduction
[Ref.: #122731]	xylose ChEBI	-	fermentation

	Metabolite production	Metabolite	Production
[Ref.: #23066]		hydrogen sulfide ChEBI	no
[Ref.: #23066]		indole ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #122731]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #23066]	beta-galactosidase	-	3.2.1.23
[Ref.: #23066]	catalase	+	1.11.1.6
[Ref.: #23066]	cytochrome oxidase	+	1.9.3.1
[Ref.: #122731]	lecithinase	-
[Ref.: #122731]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #122731]	Country	United States of America
[Ref.: #122731]	Country ISO 3 Code	USA
[Ref.: #122731]	Continent	North America
[Ref.: #122731]	Isolation date	1978
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1163]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122731]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus fusiformis gene for 16S rRNA, partial sequence	AB245423	1474	ENA	28031 tax ID
[Ref.: #1163]	Bacillus fusiformis 16S ribosomal RNA gene, partial sequence	AF169537	1412	ENA	28031 tax ID
[Ref.: #67770]	Bacillus fusiformis gene for 16S rRNA, partial sequence	AB271743	1477	ENA	28031 tax ID
[Ref.: #20218]	Bacillus fusiformis 16S rRNA gene, strain DSM 2898T	AJ310083	1515	ENA	28031 tax ID	*
[Ref.: #20218]	Bacillus fusiformis complete 16S ribosomal RNA gene	L14013	1492	ENA	28031 tax ID	*
[Ref.: #20218]	Bacillus fusiformis (DSM 2898) ribosomal RNA small subunit	M77486	1430	ENA	28031 tax ID	*
[Ref.: #20218]	Bacillus fusiformis clone DS-8_F 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478081	538	ENA	28031 tax ID	*
[Ref.: #20218]	Bacillus fusiformis clone DS-6_f 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478082	467	ENA	28031 tax ID	*
[Ref.: #20218]	Bacillus fusiformis clone DS-5N_f 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478083	579	ENA	28031 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus fusiformis NBRC 15717	GCA_006540205	contig	GenBank	28031 tax ID
[Ref.: #67770]	Lysinibacillus fusiformis NRRL NRS-350	GCA_003367495	contig	GenBank	28031 tax ID
[Ref.: #67770]	Lysinibacillus fusiformis ATCC 7055	GCA_003049525	contig	GenBank	28031 tax ID
[Ref.: #66792]	Lysinibacillus fusiformis strain ATCC 7055	28031.24	wgs	PATRIC	28031 tax ID	*
[Ref.: #66792]	Lysinibacillus fusiformis strain NBRC 15717	28031.55	wgs	PATRIC	28031 tax ID	*
[Ref.: #66792]	Lysinibacillus fusiformis ATCC 7055	2816332540	draft	JGI IMG/M	28031 tax ID	*

[Ref.: #1163]	GC-content	36.0 mol%
[Ref.: #67770]	GC-content	35-36 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus fusiformis strain ATCC 7055 PATRIC: 28031.24
[Ref.: #69480]	motile	yes	88.684	no
[Ref.: #69480]	gram-positive	yes	91.325	yes
[Ref.: #69480]	anaerobic	no	97.624	no
[Ref.: #69480]	halophile	no	90.61	no
[Ref.: #69480]	spore-forming	yes	96.742	no
[Ref.: #69480]	glucose-util	yes	83.071	no
[Ref.: #69480]	flagellated	yes	87.799	no
[Ref.: #69480]	aerobic	yes	91.549	no
[Ref.: #69480]	thermophile	no	99.95	no
[Ref.: #69480]	glucose-ferment	no	88.915	no

Availability in culture collections External links

[Ref.: #1163]

Culture collection no.

DSM 2898, ATCC 7055, JCM 31033, NRS 350, JCM 12229, BCRC 15907, CCUG 28888, IFO 15717, IFO 3528, KCTC 3454, LMG 9816, NBRC 15717, NBRC 3528, NRRL NRS-350, VTT E-011945, CRBIP 3.1597

[Ref.: #71167]

SI-ID 92143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Screening and Optimization of Newly Isolated Thermotolerant Lysinibacillus fusiformis Strain SK for Protease and Antifungal Activity.	Khadka S, Adhikari S, Thapa A, Panday R, Adhikari M, Sapkota S, Regmi RS, Adhikari NP, Proshad R, Koirala N	Curr Microbiol	10.1007/s00284-020-01976-7	2020	*
Phylogeny	Isolation and molecular identification of landfill bacteria capable of growing on di-(2-ethylhexyl) phthalate and deteriorating PVC materials.	Latorre I, Hwang S, Montalvo-Rodriguez R	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2012.707549	2012	*
Phylogeny	Description of Lysinibacillus sinduriensis sp. nov., and transfer of Bacillus massiliensis and Bacillus odysseyi to the genus Lysinibacillus as Lysinibacillus massiliensis comb. nov. and Lysinibacillus odysseyi comb. nov. with emended description of the genus Lysinibacillus.	Jung MY, Kim JS, Paek WK, Styrak I, Park IS, Sin Y, Paek J, Park KA, Kim H, Kim HL, Chang YH	Int J Syst Evol Microbiol	10.1099/ijs.0.033837-0	2011	*
Phylogeny	Lysinibacillus parviboronicapiens sp. nov., a low-boron-containing bacterium isolated from soil.	Miwa H, Ahmed I, Yokota A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.65455-0	2009	*
Phylogeny	Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov.	Ahmed I, Yokota A, Yamazoe A, Fujiwara T	Int J Syst Evol Microbiol	10.1099/ijs.0.63867-0	2007	*

References

#1163

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2898

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23066

Iftikhar Ahmed,Akira Yokota,Atsushi Yamazoe,Toru Fujiwara: Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov.. IJSEM 57: 1117 - 1125 2007 ( DOI 10.1099/ijs.0.63867-0 , PubMed 17473269 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71167

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92143.1 )

#122731 Collection of Institut Pasteur ; Curators of the CIP; CRBIP3.1597
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lysinibacillus fusiformis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lysinibacillus fusiformis strain ATCC 7055

Change proposal

Change proposal