Name: Streptomyces fradiae DSM 40063
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15172

Type strain:

Species: Streptomyces fradiae

Variant: Isotype of BacDive ID 15204

Culture col. no.: DSM 40063, ATCC 10745, ATCC 19760, CBS 498.68, ETH 13363, ETH 13472, ETH 28510, IFO 12773, IMRU 3535, ISP 5063, JCM 4133, JCM 4579, NBRC 12773, NCIB 8233, NRRL B-1195, RIA 1040, BCRC 12196, CCM 3174, CECT 3197, CGMCC 4.0576, HAMBI 965, HUT 6095, IFM 1030, IFO 3439, IFO 3718, IMET 42051, IMI 61202, KCTC 9760, MTCC 321, NBIMCC 2443, NBRC 3439, NBRC 3718, NCIMB 11005, NCIMB 8233, PCM 2330, RIA 97, VKM Ac-150, VKM Ac-151, VKM Ac-152, VKM Ac-764

Strain history: KCC S-0133 <-- K. Tubaki <-- T. Yamaguchi (IAM 0083) <-- M. Kuroya <-- IMRU 3535.

NCBI tax ID(s): 1319510 (strain), 1906 (species)

Other strains from Streptomyces fradiae

S. fradiae DSM 43404, IMRU 1222, IP 945
S. fradiae 320, DSM 40536, ATCC 13167, CBS ...
S. fradiae Tü 11, DSM 40696, NRRL 2598, ETH ...
S. fradiae Tü 29, DSM 40705, NRRL 2599, ETH ...
S. fradiae Tü 39, DSM 40711, NRRL 2765, ETH ...
S. fradiae M-4047, DSM 40758, ATCC 14544, ...
S. fradiae BL-619, DSM 40809, ATCC 14443
S. fradiae BL-614, DSM 40810, ATCC 15438, ...
S. fradiae Schering 371, DSM 40877, IFO 3360, ...
S. fradiae MA 2898, DSM 40943, ATCC 21096, ...
S. fradiae DSM 40952, IMRU 3554
S. fradiae DSM 40953, IMRU 3556b
S. fradiae DSM 40954, ATCC 11903, IFO 3123, ...
S. fradiae DSM 40955, IMRU 1186, ETH 16803
S. fradiae DSM 40956, IMRU 3572
S. fradiae W 3594, DSM 40957
S. fradiae W 3719, DSM 40958
S. fradiae B-131, DSM 41128, IMRU 3695
S. fradiae DSM 41129, IMRU 3696, NRRL B-556
S. fradiae DSM 41205, IMRU 3884
S. fradiae DSM 41206, IMRU 3885
S. fradiae M48-E2724, DSM 41546, ATCC 19609, ...
S. fradiae MA-2898, DSM 41547, ATCC 21096, ...
S. fradiae MA-2911, DSM 41548, ATCC 21097, ...
S. fradiae MA-2912, DSM 41549, ATCC 21098, ...
S. fradiae DSM 41550, ATCC 21401, Illinois ...
S. fradiae DSM 41551, ATCC 21896, IFO 3360, ...
S. fradiae DSM 41543, ATCC 11903, IFO 3123
S. fradiae MDB 261, DSM 41544, ATCC 15861, ...
S. fradiae 49, KY-631, DSM 41545, ATCC 19063
S. fradiae T-1-21-8, DSM 41436, CCRC 12198, ...
S. fradiae M48-E2724, DSM 41757, ATCC 19609, ...
S. fradiae FD 276, W-7-2, DSM 46372, CCM 3174, ...
S. fradiae ST002379(HKI), F046, BI 09899, ...
S. fradiae ST033256(HKI),
S. fradiae ST033223(HKI),
S. fradiae ST021603(HKI), F091, P215, DoHKI72, ...
S. fradiae ST005023(HKI), 3, BU3, IMET 40229
S. fradiae IMI 116271
S. fradiae JCM 4037

Section

Streptomyces fradiae DSM 40063 is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	Streptomycetales
	Family	Streptomycetaceae
	Genus	*Streptomyces*
	Species	**Streptomyces fradiae**
	Full Scientific Name (LPSN)	Streptomyces fradiae (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* fradii"*
	Synonym	Streptomyces roseoflavus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.198

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9264]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9264]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9264]	Name of produced compound	fradicin
[Ref.: #9264]	Name of produced compound	neomycin
[Ref.: #20216]	Name of produced compound	Fradicidin
[Ref.: #20216]	Name of produced compound	Neomycin
[Ref.: #67770]	Name of produced compound	fradicin

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite production	Metabolite
[Ref.: #67770]		neomycin ChEBI

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9264]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184776 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	41
Soil Samples	538
Animal Samples	100
Plant Samples	96
Total Samples	775

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces fradiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4579	D44246	121	ENA	1906 tax ID	*
[Ref.: #20218]	Streptomyces fradiae gene for 16S rRNA, partial sequence, strain: NBRC 12174	AB184059	1470	ENA	1906 tax ID	*
[Ref.: #20218]	Streptomyces fradiae gene for 16S rRNA, partial sequence, strain: NBRC 12773	AB184134	1463	ENA	1906 tax ID	*
[Ref.: #20218]	Streptomyces fradiae gene for 16S rRNA, partial sequence, strain: NBRC 3439	AB184776	1467	ENA	1906 tax ID	*
[Ref.: #20218]	Streptomyces fradiae strain NRRL B-1195 16S ribosomal RNA gene, partial sequence	DQ026630	1485	ENA	1906 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces fradiae ATCC 10745 = DSM 40063 strain ATCC 10745 chromosome, complete genome	CP023696		ENA	1319510 tax ID
[Ref.: #67770]	Streptomyces fradiae ATCC 10745 = DSM 40063 DSM 40063	GCA_002119225	scaffold	GenBank	1319510 tax ID
[Ref.: #67770]	Streptomyces fradiae NRRL B-1195	GCA_002154445	scaffold	GenBank	1906 tax ID
[Ref.: #66792]	Streptomyces fradiae ATCC 10745 = DSM 40063	1319510.4	complete	PATRIC	1319510 tax ID	*
[Ref.: #66792]	Streptomyces fradiae strain DSM 40063	1906.13	wgs	PATRIC	1906 tax ID	*
[Ref.: #66792]	Streptomyces fradiae DSM 40063	2916795502	draft	JGI IMG/M	1906 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces fradiae ATCC 10745 = DSM 40063 ATCC 10745 NCBI: GCA_008704425.1
[Ref.: #69480]	anaerobic	no	99.702	no
[Ref.: #69480]	thermophile	no	99.534	no
[Ref.: #69480]	spore-forming	yes	100	yes
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	motile	no	93.198	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces fradiae ATCC 10745 = DSM 40063 ATCC 10745 NCBI: GCA_008704425.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

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Culture collection no.

DSM 40063, ATCC 10745, ATCC 19760, CBS 498.68, ETH 13363, ETH 13472, ETH 28510, IFO 12773, IMRU 3535, ISP 5063, JCM 4133, JCM 4579, NBRC 12773, NCIB 8233, NRRL B-1195, RIA 1040, BCRC 12196, CCM 3174, CECT 3197, CGMCC 4.0576, HAMBI 965, HUT 6095, IFM 1030, IFO 3439, IFO 3718, IMET 42051, IMI 61202, KCTC 9760, MTCC 321, NBIMCC 2443, NBRC 3439, NBRC 3718, NCIMB 11005, NCIMB 8233, PCM 2330, RIA 97, VKM Ac-150, VKM Ac-151, VKM Ac-152, VKM Ac-764

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Three Actinobacteria Strains Presenting New Candidate Organisms with High Potentials for Specific P450 Cytochromes.	Grumaz C, Vainshtein Y, Kirstahler P, Luetz S, Kittelmann M, Schroer K, Eggimann FK, Czaja R, Vogel A, Hilberath T, Worsch A, Girhard M, Urlacher VB, Sandberg M, Sohn K	Genome Announc	10.1128/genomeA.00532-17	2017	*
Metabolism	The neomycin biosynthetic gene cluster of Streptomyces fradiae NCIMB 8233: genetic and biochemical evidence for the roles of two glycosyltransferases and a deacetylase.	Fan Q, Huang F, Leadlay PF, Spencer JB	Org Biomol Chem	10.1039/b808734b	2008	*
Enzymology	Elaboration of neosamine rings in the biosynthesis of neomycin and butirosin.	Huang F, Spiteller D, Koorbanally NA, Li Y, Llewellyn NM, Spencer JB	Chembiochem	10.1002/cbic.200600371	2007	*
Enzymology	Biosynthesis of 2-deoxystreptamine by three crucial enzymes in Streptomyces fradiae NBRC 12773.	Kudo F, Yamamoto Y, Yokoyama K, Eguchi T, Kakinuma K	J Antibiot (Tokyo)	10.1038/ja.2005.104	2005	*
Enzymology	The neomycin biosynthetic gene cluster of Streptomyces fradiae NCIMB 8233: characterisation of an aminotransferase involved in the formation of 2-deoxystreptamine.	Huang F, Haydock SF, Mironenko T, Spiteller D, Li Y, Spencer JB	Org Biomol Chem	10.1039/b501199j	2005	*
Metabolism	[Use of the protoplast fusion and regeneration method for screening antibiotic producers among inactive strains of Streptomyces].	Malanicheva IA, Koz'mian LI, Belova AIu, Dudnik IuV	Antibiot Khimioter		1993	*
Enzymology	Nucleotide sequence of a streptomycete aminoglycoside phosphotransferase gene and its relationship to phosphotransferases encoded by resistance plasmids.	Thompson CJ, Gray GS	Proc Natl Acad Sci U S A	10.1073/pnas.80.17.5190	1983	*
Metabolism	Production of methionine-excreting mutants of Streptomyces fradiae.	Young RA, Smith RE	Can J Microbiol	10.1139/m75-085	1975	*
Metabolism	Degradation of feather keratin by culture filtrates of Streptomyces fradiae.	Young RA, Smith RE	Can J Microbiol	10.1139/m75-084	1975	*

References

#9264

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40063

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces fradiae ATCC 10745 = DSM 40063 ATCC 10745

Streptomyces fradiae ATCC 10745 = DSM 40063 ATCC 10745

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