Cite this strain

Atopobacter phocae (CCUG 44562)

Name: Atopobacter phocae (CCUG 44562)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 151663

Type strain

Culture col. no. CCUG 44562

NCBI tax ID(s) 136492

Special Collections CCUG

Links

Atopobacter phocae CCUG 44562 is a microaerophile, mesophilic prokaryote of the family Carnobacteriaceae.

microaerophile mesophilic

Name and taxonomic classification

SI-ID 110059

CCUG 44562

@ref 20215

Last LPSN update 2025-12-16 10:06:24

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Carnobacteriaceae

Genus Atopobacter

Species Atopobacter phocae

Full scientific name Atopobacter phocae Lawson et al. 2000

BacDive ID	Other strains from **Atopobacter phocae** (3)	Type strain
138666	A. phocae CIP 106392, CCUG 42358, ATCC BAA-285 (type strain)
150858	A. phocae CCUG 42577
151132	A. phocae CCUG 43341

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
56381	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

56381

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68379	16988 ChEBI	D-ribose	+	fermentation	from API Coryne
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	-	from API rID32STR

Enzymes

@ref	Value	Activity
68381	Alanyl-Phenylalanyl-Proline arylamidase	-	from API rID32STR
68381	alkaline phosphatase	-	from API rID32STR
68379	alkaline phosphatase	+	from API Coryne
68381	alpha-galactosidase	-	from API rID32STR
68379	alpha-glucosidase	-	from API Coryne
68381	arginine dihydrolase	+	from API rID32STR
68381	beta-galactosidase	-	from API rID32STR
68379	beta-galactosidase	-	from API Coryne
68381	beta-glucosidase	-	from API rID32STR
68379	beta-glucosidase	-	from API Coryne
68381	beta-glucuronidase	-	from API rID32STR
68379	beta-glucuronidase	-	from API Coryne
68381	beta-mannosidase	-	from API rID32STR
68379	catalase	-	from API Coryne
68379	gelatinase	-	from API Coryne
68381	glycyl tryptophan arylamidase	+	from API rID32STR
68379	N-acetyl-beta-glucosaminidase	-	from API Coryne
68381	N-acetyl-beta-glucosaminidase	-	from API rID32STR
68379	pyrazinamidase	-	from API Coryne
68381	pyrrolidonyl arylamidase	-	from API rID32STR
68379	pyrrolidonyl arylamidase	+	from API Coryne
68381	urease	-	from API rID32STR
68379	urease	-	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
56381	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
56381	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#56381	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44562
#68379	Automatically annotated from API Coryne .
#68381	Automatically annotated from API rID32STR .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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