Streptomyces flavidovirens (DSM 40150, AS 4.1374, ATCC 19900)

Name: Streptomyces flavidovirens (DSM 40150, AS 4.1374, ATCC 19900)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15160

Type strain

Culture col. no. DSM 40150 AS 4.1374 ATCC 19900 CBS 684.69 ETH 28431 12 more

NCBI tax ID(s) 1123319 67298

Special Collections DSMZ JCM Wink compendium

History <- E.B. Shirling, ISP <- T.P. Preobrazhenskaya, INA KCC S-0474 <-- IFO 13039 <-- SAJ <-- ISP 5150 <-- INA 12287.

Links

Streptomyces flavidovirens DSM 40150 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389292

LMG 19387,ATCC 19900,DSM 40150,IFO 13039,JCM 4474,VKM Ac-1771,ATCC 25451,CCRC 13761,IMET 43744,CBS 684.69,NBRC 13039,AS 4.1374,BCRC 13761,CGMCC 4.1374,NRRL B-2708

@ref 20215

Last LPSN update 2026-02-09 11:21:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces flavidovirens

Full scientific name Streptomyces flavidovirens (Kudrina 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (1)

"Actinomyces flavidovirens"

BacDive ID	Other strains from **Streptomyces flavidovirens** (21)	Type strain
128314	S. flavidovirens ST029361(HKI), Wirt IMET07810,
128315	S. flavidovirens ST032014(HKI), XU1,
128316	S. flavidovirens ST032015(HKI),
128317	S. flavidovirens ST032017(HKI),
128318	S. flavidovirens ST032018(HKI),
128319	S. flavidovirens ST032019(HKI),
128320	S. flavidovirens ST032020(HKI),
128321	S. flavidovirens ST032021(HKI), a-7830,
128322	S. flavidovirens ST032023(HKI),
128323	S. flavidovirens ST032024(HKI),
128324	S. flavidovirens ST032028(HKI), k-7835,
128325	S. flavidovirens STI05017(IMET), X5,
128326	S. flavidovirens STI05056(IMET), pX24,
128327	S. flavidovirens STI05057(IMET), b-7815, pX10,
128328	S. flavidovirens ST032022(HKI),
128329	S. flavidovirens ST032025(HKI),
128330	S. flavidovirens ST032016(HKI),
128331	S. flavidovirens ST032027(HKI), h-7835,
128332	S. flavidovirens ST032026(HKI),
128333	S. flavidovirens ST032029(HKI), H-15,
128334	S. flavidovirens ST032013(HKI),

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		93.1
125439		99.8	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9350	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9350	positive	growth	28
18548	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.388
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125438		93.947
125439		94.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18548	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18548	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18548	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18548	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
18548	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18548	29864 ChEBI	mannitol	-
18548	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18548	16634 ChEBI	raffinose	-
18548	26546 ChEBI	rhamnose	-
18548	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18548	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18548	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Continent	Country ISO 3 Code
9350	soil	USSR	Asia
67770	Soil	Russia		RUS

Taxonmaps

69479

Global distribution of 16S sequence LC506591 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	126
Soil Samples	953
Animal Samples	103
Plant Samples	429
Total Samples	1611

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18548	1	German classification According to TRBA 466
9350	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42908v1 assembly for Streptomyces flavidovirens DSM 40150	scaffold	GCA_000429085	1123319.3	2522572192	1123319	69.1

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces flavidovirens strain IFO 13039 16S ribosomal RNA gene, partial sequence	AY999866	1434	67298
20218	Streptomyces flavidovirens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4474	D44169	120	67298
20218	Streptomyces flavidovirens gene for 16S rRNA, partial sequence, strain: NBRC 13039	AB184270	1481	67298
67770	Streptomyces flavidovirens JCM 4474 gene for 16S rRNA, partial sequence	LC506591	1455	67298

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces flavidovirens DSM 40150
NCBI: GCA_000429085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	motility	BacteriaNetⓘ	no	93.10	no
125439	spore_formation	BacteriaNetⓘ	yes	94.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces flavidovirens DSM 40150
PATRIC: 1123319.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.59	no
125438	anaerobic	anaerobicⓘ	no	96.31	no
125438	spore-forming	spore-formingⓘ	yes	93.95	no
125438	aerobic	aerobicⓘ	yes	91.39	no
125438	thermophilic	thermophileⓘ	no	96.49	no
125438	flagellated	motile2+ⓘ	no	88.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Isolation of a Novel Streptomyces Species from the Tuha Basin and Genomic Insights into Its Environmental Adaptability.	Niu X, Wu Y, Yu X, Wu S, Zhang G, Liu G, Chen T, Zhang W.	Microorganisms	10.3390/microorganisms13102238	2025
Enzymology	Functional characterisation of twelve terpene synthases from actinobacteria.	Chhalodia AK, Xu H, Tabekoueng GB, Gu B, Taizoumbe KA, Lauterbach L, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.19.100	2023
Enzymology	Widely Distributed Bifunctional Bacterial Cytochrome P450 Enzymes Catalyze both Intramolecular C-C Bond Formation in cyclo-l-Tyr-l-Tyr and Its Coupling with Nucleobases.	Liu J, Harken L, Yang Y, Xie X, Li SM.	Angew Chem Int Ed Engl	10.1002/anie.202200377	2022
	New carbasugars from Streptomyces lincolnensis.	Sedmera P, Halada P, Pospisil S.	Magn Reson Chem	10.1002/mrc.2408	2009
	An antibacterial compound pyrimidomycin produced by Streptomyces sp. PSAA01 isolated from soil of Eastern Himalayan foothill.	Das P, Kundu S, Maiti PK, Mandal S, Sahoo P, Mandal S.	Sci Rep	10.1038/s41598-022-14549-4	2022
	Novel Stereoselective Syntheses of (+)-Streptol and (-)-1-epi-Streptol Starting from Naturally Abundant (-)-Shikimic Acid.	Zhu XL, Luo YQ, Wang L, Huang YK, He YG, Xie WJ, Liu SL, Shi XX.	ACS Omega	10.1021/acsomega.1c02502	2021
Metabolism	Utilisation of structurally diverse organophosphonates by Streptomycetes.	Obojska A, Lejczak B.	Appl Microbiol Biotechnol	10.1007/s00253-003-1281-z	2003
	More P450s Are Involved in Secondary Metabolite Biosynthesis in Streptomyces Compared to Bacillus, Cyanobacteria, and Mycobacterium.	Mnguni FC, Padayachee T, Chen W, Gront D, Yu JH, Nelson DR, Syed K.	Int J Mol Sci	10.3390/ijms21134814	2020
Metabolism	Characterization of the biosynthetic gene cluster for cryptic phthoxazolin A in Streptomyces avermitilis.	Suroto DA, Kitani S, Arai M, Ikeda H, Nihira T.	PLoS One	10.1371/journal.pone.0190973	2018
	Partner choice and fidelity stabilize coevolution in a Cretaceous-age defensive symbiosis.	Kaltenpoth M, Roeser-Mueller K, Koehler S, Peterson A, Nechitaylo TY, Stubblefield JW, Herzner G, Seger J, Strohm E.	Proc Natl Acad Sci U S A	10.1073/pnas.1400457111	2014
	Evaluation of Phenazine Derivatives from the Lichen-Associated Streptomyces flavidovirens as Potent Antineuroinflammatory Agents In Vitro and In Vivo.	Gao LL, Gao YQ, Liu WY, Stadler M, Zhu YT, Qi JZ, Han WB, Gao JM.	J Nat Prod	10.1021/acs.jnatprod.4c00334	2024
	New insights into the dihydro-mureidomycin biosynthesis controlled by two unusual proteins in Streptomyces roseosporus.	Liu N, Xu Y, Shang F, Sun H, Liu X, Huang Y, Tan H, Zhang J.	Microb Cell Fact	10.1186/s12934-023-02260-6	2023
	Engineering of leucine-responsive regulatory protein improves spiramycin and bitespiramycin biosynthesis.	Lu Z, Zhang X, Dai J, Wang Y, He W.	Microb Cell Fact	10.1186/s12934-019-1086-0	2019
Enzymology	A new depsipeptide antibiotic, citropeptin.	Hayakawa Y, Nakagawa M, Toda Y, Seto H.	Agric Biol Chem	10.1080/00021369.1990.10870082	1990
	Structural studies on new depsipeptide antibiotics, variapeptin and citropeptin.	Nakagawa M, Hayakawa Y, Furihata K, Seto H.	J Antibiot (Tokyo)	10.7164/antibiotics.43.477	1990
Pathogenicity	Mureidomycins A-D, novel peptidylnucleoside antibiotics with spheroplast forming activity. I. Taxonomy, fermentation, isolation and physico-chemical properties.	Inukai M, Isono F, Takahashi S, Enokita R, Sakaida Y, Haneishi T.	J Antibiot (Tokyo)	10.7164/antibiotics.42.662	1989
	Use of Endophytic and Rhizosphere Actinobacteria from Grapevine Plants To Reduce Nursery Fungal Graft Infections That Lead to Young Grapevine Decline.	Alvarez-Perez JM, Gonzalez-Garcia S, Cobos R, Olego MA, Ibanez A, Diez-Galan A, Garzon-Jimeno E, Coque JJR.	Appl Environ Microbiol	10.1128/aem.01564-17	2017
Metabolism	Characterization of LipL as a non-heme, Fe(II)-dependent alpha-ketoglutarate:UMP dioxygenase that generates uridine-5'-aldehyde during A-90289 biosynthesis.	Yang Z, Chi X, Funabashi M, Baba S, Nonaka K, Pahari P, Unrine J, Jacobsen JM, Elliott GI, Rohr J, Van Lanen SG.	J Biol Chem	10.1074/jbc.m110.203562	2011
Phylogeny	Streptomyces amritsarensis sp. nov., exhibiting broad-spectrum antimicrobial activity.	Sharma D, Mayilraj S, Manhas RK.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0151-2	2014
	Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea.	Risdian C, Landwehr W, Rohde M, Schumann P, Hahnke RL, Sproer C, Bunk B, Kampfer P, Schupp PJ, Wink J.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01528-4	2021
Phylogeny	Streptomyces altiplanensis sp. nov., an alkalitolerant species isolated from Chilean Altiplano soil, and emended description of Streptomyces chryseus (Krasil'nikov et al. 1965) Pridham 1970.	Cortes-Albayay C, Dorador C, Schumann P, Schniete JK, Herron P, Andrews B, Asenjo J, Nouioui I	Int J Syst Evol Microbiol	10.1099/ijsem.0.003525	2019
Phylogeny	Streptomyces hypolithicus sp. nov., isolated from an Antarctic hypolith community.	Le Roes-Hill M, Rohland J, Meyers PR, Cowan DA, Burton SG	Int J Syst Evol Microbiol	10.1099/ijs.0.007971-0	2009

References

#9350	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40150
#18548	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces flavidovirens (DSM 40150, AS 4.1374, ATCC 19900)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000429085

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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