Name: Streptomyces flavidovirens DSM 40150
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15160

Type strain:

Species: Streptomyces flavidovirens

Culture col. no.: DSM 40150, AS 4.1374, ATCC 19900, CBS 684.69, ETH 28431, IFO 13039, INA 12287, ISP 5150, NBRC 13039, RIA 1231, JCM 4474, ATCC 25451, BCRC 13761, CGMCC 4.1374, IMET 43744, NRRL B-2708, VKM Ac-1771

Strain history: KCC S-0474 <-- IFO 13039 <-- SAJ <-- ISP 5150 <-- INA 12287.

NCBI tax ID(s): 1123319 (strain), 67298 (species)

SI-ID 389292

LMG 19387, ATCC 19900, DSM 40150, IFO 13039, JCM 4474, VKM Ac-1771, ATCC 25451, CCRC 13761, IMET 43744, CBS 684.69, NBRC 13039, AS 4.1374, BCRC 13761, CGMCC 4.1374, NRRL B-2708

Other strains from Streptomyces flavidovirens

Section

Streptomyces flavidovirens DSM 40150 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces flavidovirens**
	Full Scientific Name (LPSN)	Streptomyces flavidovirens (Kudrina 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces flavidovirens"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.774

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9350]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9350]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9350]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9350]	growth	28 °C
[Ref.: #18548]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9350]	Temperature range	mesophilic
[Ref.: #18548]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18548]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18548]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18548]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18548]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18548]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18548]	mannitol ChEBI	-
[Ref.: #18548]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18548]	raffinose ChEBI	-
[Ref.: #18548]	rhamnose ChEBI	-
[Ref.: #18548]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18548]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18548]	108	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9350]	Sample type/isolated from	soil
[Ref.: #9350]	Country	USSR
[Ref.: #9350]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC506591 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	126
Soil Samples	953
Animal Samples	103
Plant Samples	429
Total Samples	1611

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18548]	Biosafety level	1	German classification
[Ref.: #9350]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces flavidovirens JCM 4474 gene for 16S rRNA, partial sequence	LC506591	1455	ENA	67298 tax ID
[Ref.: #20218]	Streptomyces flavidovirens strain IFO 13039 16S ribosomal RNA gene, partial sequence	AY999866	1434	ENA	67298 tax ID	*
[Ref.: #20218]	Streptomyces flavidovirens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4474	D44169	120	ENA	67298 tax ID	*
[Ref.: #20218]	Streptomyces flavidovirens gene for 16S rRNA, partial sequence, strain: NBRC 13039	AB184270	1481	ENA	67298 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces flavidovirens DSM 40150	GCA_000429085	scaffold	GenBank	1123319 tax ID
[Ref.: #66792]	Streptomyces flavidovirens DSM 40150	1123319.3	wgs	PATRIC	1123319 tax ID	*
[Ref.: #66792]	Streptomyces flavidovirens DSM 40150	2522572192	draft	JGI IMG/M	1123319 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces flavidovirens DSM 40150 DSM 40150 NCBI: GCA_000429085.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces flavidovirens DSM 40150 PATRIC: 1123319.3
[Ref.: #69480]	motile	no	94.074	no
[Ref.: #69480]	flagellated	no	97.897	no
[Ref.: #69480]	gram-positive	yes	87.659	no
[Ref.: #69480]	anaerobic	no	99.206	no
[Ref.: #69480]	aerobic	yes	93.848	no
[Ref.: #69480]	halophile	no	89.833	no
[Ref.: #69480]	spore-forming	yes	93.724	no
[Ref.: #69480]	thermophile	no	95.834	no
[Ref.: #69480]	glucose-util	yes	90.394	yes
[Ref.: #69480]	glucose-ferment	no	89.644	no

Availability in culture collections External links

[Ref.: #9350]

Culture collection no.

DSM 40150, AS 4.1374, ATCC 19900, CBS 684.69, ETH 28431, IFO 13039, INA 12287, ISP 5150, NBRC 13039, RIA 1231, JCM 4474, ATCC 25451, BCRC 13761, CGMCC 4.1374, IMET 43744, NRRL B-2708, VKM Ac-1771

[Ref.: #84264]

SI-ID 389292

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces altiplanensis sp. nov., an alkalitolerant species isolated from Chilean Altiplano soil, and emended description of Streptomyces chryseus (Krasil'nikov et al. 1965) Pridham 1970.	Cortes-Albayay C, Dorador C, Schumann P, Schniete JK, Herron P, Andrews B, Asenjo J, Nouioui I	Int J Syst Evol Microbiol	10.1099/ijsem.0.003525	2019	*
Phylogeny	Streptomyces hypolithicus sp. nov., isolated from an Antarctic hypolith community.	Le Roes-Hill M, Rohland J, Meyers PR, Cowan DA, Burton SG	Int J Syst Evol Microbiol	10.1099/ijs.0.007971-0	2009	*

References

#9350

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40150

#18548

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84264

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389292.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces flavidovirens DSM 40150 DSM 40150

Streptomyces flavidovirens DSM 40150

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