Name: Streptomyces flaveolus Actinomyces 168
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15154

Type strain:

Species: Streptomyces flaveolus

Strain Designation: Actinomyces 168

Variant: Isotype of BacDive ID 15155

Culture col. no.: DSM 40061, ATCC 19754, ATCC 25460, ATCC 3319, CBS 493.68, CBS 693.69, DSM 40328, ETH 12399, IAM 0117, IFO 12768, IMET 40233, IMRU 3319, ISP 5061, ISP 5328, JCM 4032, JCM 4577, KCC S-0032, KCC S-0577, NBRC 12768, NRRL B-1334, NRRL B-2688, RIA 1035, BCRC 12489, CBS 128.20, CCM 3171, CECT 3181, CGMCC 4.1432, HAMBI 893, ICMP 392, IFO 3408, IFO 3715, KCTC 9022, LMG 19328, NBRC 3408, NBRC 3715, RIA 485, VKM Ac-965

Strain history: KCC S-0032 <-- T. Yamaguchi (IAM 0005) <-- MTHU 65 <-- Hyden Chem. Corp. <-- ATCC 3319 <-- IMRU 3319.

NCBI tax ID(s): 67297 (species)

SI-ID 45808

LMG 19328, ATCC 19754, ATCC 3319, CCM 3171, CCRC 12489, IFO 12768, IFO 3408, IFO 3715, IMET 40233, JCM 4032, JCM 4577, NRRL B-1334, NRRL B-2688, VKM Ac-965, CBS 493.68, CBS 128.20, AS 4.1432, CECT 3181, KCTC 9022, IAM 0005, NBRC 12768, NBRC 3408, NBRC 3715, ICMP 392, BCRC 12489, IAM 0117, HAMBI 893, ICMP 741, CGMCC 4.1432, DSM 40061

Special Collections

Other strains from Streptomyces flaveolus

Section

Streptomyces flaveolus Actinomyces 168 is a spore-forming bacterium that builds an aerial mycelium and produces amino acids.

amino acid production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces flaveolus**
	Full Scientific Name (LPSN)	Streptomyces flaveolus (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces flaveolus"

Information on morphological and physiological properties Morphology

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 2

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 3

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 4

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 5

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 6

[Ref.: #19396]	Colony color	Yellow
[Ref.: #19396]	Incubation period	10-14 days
[Ref.: #19396]	Cultivation medium used	ISP 7

[Ref.: #19396]	Multicellular complex forming ability	yes
[Ref.: #19396]	Multicellular complex name	Aerial Mycelium
[Ref.: #19396]	Multicellular complex color	Grey
[Ref.: #19396]	Medium Name (multicellularity)	ISP 2

[Ref.: #19396]	Multicellular complex forming ability	yes
[Ref.: #19396]	Multicellular complex name	Aerial Mycelium
[Ref.: #19396]	Multicellular complex color	Grey
[Ref.: #19396]	Medium Name (multicellularity)	ISP 3

[Ref.: #19396]	Multicellular complex forming ability	yes
[Ref.: #19396]	Multicellular complex name	Aerial Mycelium
[Ref.: #19396]	Multicellular complex color	Grey
[Ref.: #19396]	Medium Name (multicellularity)	ISP 4

[Ref.: #19396]	Multicellular complex forming ability	yes
[Ref.: #19396]	Multicellular complex name	Aerial Mycelium
[Ref.: #19396]	Multicellular complex color	Grey
[Ref.: #19396]	Medium Name (multicellularity)	ISP 5

[Ref.: #19396]	Multicellular complex forming ability	no
[Ref.: #19396]	Medium Name (multicellularity)	ISP 6

[Ref.: #19396]	Multicellular complex forming ability	yes
[Ref.: #19396]	Multicellular complex name	Aerial Mycelium
[Ref.: #19396]	Multicellular complex color	White
[Ref.: #19396]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9243]	growth	28 °C
[Ref.: #19396]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19396]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: hairy
[Ref.: #19396]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.194
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9243]

Name of produced compound

L isoleucine

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19396]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19396]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19396]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19396]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19396]	mannitol ChEBI	+
[Ref.: #19396]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19396]	raffinose ChEBI	+
[Ref.: #19396]	rhamnose ChEBI	+
[Ref.: #19396]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19396]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19396]	262	+	-	-	-	-	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9243]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9243]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19396]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces flaveolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4577	D44245	121	GenBank ENA	67297 tax ID	*
[Ref.: #20218]	Streptomyces flaveolus gene for 16S rRNA, partial sequence, strain: NBRC 12768	AB184131	1463	GenBank ENA	67297 tax ID	*
[Ref.: #20218]	Streptomyces flaveolus gene for 16S rRNA, partial sequence, strain: NBRC 3408	AB184764	1477	GenBank ENA	67297 tax ID	*
[Ref.: #20218]	Streptomyces flaveolus gene for 16S rRNA, partial sequence, strain: NBRC 3715	AB184786	1477	GenBank ENA	67297 tax ID	*
[Ref.: #20218]	Streptomyces flaveolus strain NRRL B-1334 16S ribosomal RNA gene, partial sequence	EF654098	1481	GenBank ENA	67297 tax ID	*
[Ref.: #20218]	Streptomyces flaveolus strain NRRL B-2688 16S ribosomal RNA gene, partial sequence	AY999799	1192	GenBank ENA	67297 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces flaveolus JCM 4032	GCA_014648815	contig	GenBank ENA	67297 tax ID	*
[Ref.: #66792]	Streptomyces flaveolus strain JCM 4032	67297.6	wgs	PATRIC	67297 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces flaveolus strain JCM 4032 PATRIC: 67297.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces flaveolus strain JCM 4032 PATRIC: 67297.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.415	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.894	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.194	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.695	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #9243]

Culture collection no.

DSM 40061, ATCC 19754, ATCC 25460, ATCC 3319, CBS 493.68, CBS 693.69, DSM 40328, ETH 12399, IAM 0117, IFO 12768, IMET 40233, IMRU 3319, ISP 5061, ISP 5328, JCM 4032, JCM 4577, KCC S-0032, KCC S-0577, NBRC 12768, NRRL B-1334, NRRL B-2688, RIA 1035, BCRC 12489, CBS 128.20, CCM 3171, CECT 3181, CGMCC 4.1432, HAMBI 893, ICMP 392, IFO 3408, IFO 3715, KCTC 9022, LMG 19328, NBRC 3408, NBRC 3715, RIA 485, VKM Ac-965

[Ref.: #84258]

SI-ID 45808

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces chilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment.	Ray L, Suar M, Pattnaik AK, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.046284-0	2013	*

References

#9243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40061

#19396

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84258

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45808.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces flaveolus strain JCM 4032

Streptomyces flaveolus strain JCM 4032

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