Name: Streptomyces diastatochromogenes Ogata 207
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15125

Type strain:

Species: Streptomyces diastatochromogenes

Strain Designation: Ogata 207

Culture col. no.: DSM 40449, ATCC 12309, CBS 370.58, CBS 690.72, ETH 31546, IFO 13389, IFO 3337, ISP 5449, JCM 4119, JCM 4746, KCC S-0119, KCC S-0746, NBRC 13389, NBRC 3337, NRRL B-1698, PSA 218, RIA 1350, VKM Ac-1760, BCRC 13668, CFBP 4540, CGMCC 4.1606, CIP 105123, KACC 20133, VTT E-042624, CCM 3113, KCC S-0244

Strain history: CIP <- 1997, IFO <- 1978, KCC <- Res. Lab., Ihara Noyaku Co, Japan

NCBI tax ID(s): 42236 (species)

SI-ID 39003

ATCC 12309, IFO 3337, IFO 13389, CIP 105123, CCM 3113, DSM 40449, JCM 4119, CCRC 13668, NRRL B-1698, VKM Ac-1760, JCM 4746, CBS 370.58, AS 4.1606, NBRC 13389, NBRC 3337, BCRC 13668, KACC 20133, CFBP 4540, CGMCC 4.1606, VTT E-042624

Other strains from Streptomyces diastatochromogenes

S. diastatochromogenes IN-701, DSM 40608, ATCC 23862, ...
S. diastatochromogenes Tü 20, DSM 40700, CGMCC AS 4.1385, ...
S. diastatochromogenes ST033302(HKI),

Section

Streptomyces diastatochromogenes Ogata 207 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from Environment, Soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces diastatochromogenes**
	Full Scientific Name (LPSN)	Streptomyces diastatochromogenes (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces diastatochromogenes"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19456]	Colony color	Beige
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 2

[Ref.: #19456]	Colony color	Beige
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 3

[Ref.: #19456]	Colony color	Beige
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 4

[Ref.: #19456]	Colony color	Beige
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 5

[Ref.: #19456]	Colony color	Brown
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 6

[Ref.: #19456]	Colony color	Brown
[Ref.: #19456]	Incubation period	10-14 days
[Ref.: #19456]	Cultivation medium used	ISP 7

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Medium Name (multicellularity)	ISP 2

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Multicellular complex color	Grey
[Ref.: #19456]	Medium Name (multicellularity)	ISP 3

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Multicellular complex color	White
[Ref.: #19456]	Medium Name (multicellularity)	ISP 4

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Multicellular complex color	White
[Ref.: #19456]	Medium Name (multicellularity)	ISP 5

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Multicellular complex color	White
[Ref.: #19456]	Medium Name (multicellularity)	ISP 6

[Ref.: #19456]	Multicellular complex forming ability	yes
[Ref.: #19456]	Multicellular complex name	Aerial Mycelium
[Ref.: #19456]	Multicellular complex color	White
[Ref.: #19456]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium

MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 194

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 116

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9551]	growth	28 °C
[Ref.: #19456]	optimum	28 °C
[Ref.: #39199]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9551]	Temperature range	mesophilic
[Ref.: #19456]	Temperature range	mesophilic
[Ref.: #39199]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19456]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19456]	Type of spore	spore
[Ref.: #19456]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19456]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19456]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19456]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19456]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19456]	mannitol ChEBI	+
[Ref.: #19456]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19456]	raffinose ChEBI	+
[Ref.: #19456]	rhamnose ChEBI	+
[Ref.: #19456]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19456]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19456]	317	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #118927]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9551]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19456]	Biosafety level	1	Risk group (German classification)
[Ref.: #118927]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S ribosomal RNA, 23S ribosomal RNA, complete and partial sequence, strain:ATCC 12309	AB026218	1851	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S rRNA, 16S-23S intergenic spacer, 23S rRNA, partial and complete sequence, isolate:ATCC 12309, clone:DI2	AB041128	321	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM40449 16S-23S intergenic spacer region, partial sequence	AF363497	296	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S ribosomal RNA, complete sequence	D63867	1531	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296962	258	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS14 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296963	263	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS21 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296964	263	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS26 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296965	267	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296966	263	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes strain DSM 40449 clone ITS9 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296967	268	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4746	D44330	121	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 13389	AB184373	1442	ENA	42236 tax ID	*
[Ref.: #20218]	Streptomyces diastatochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 3337	AB184747	1478	ENA	42236 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces diastatochromogenes NRRL B-1698	GCA_001418405	scaffold	GenBank	42236 tax ID
[Ref.: #67770]	Streptomyces diastatochromogenes ATCC 12309	GCA_001550305	contig	GenBank	42236 tax ID
[Ref.: #66792]	Streptomyces diastatochromogenes strain ATCC 12309	42236.5	wgs	PATRIC	42236 tax ID	*
[Ref.: #66792]	Streptomyces diastatochromogenes ATCC 12309	2724679178	draft	JGI IMG/M	42236 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces diastatochromogenes strain ATCC 12309 PATRIC: 42236.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces diastatochromogenes strain ATCC 12309 PATRIC: 42236.5
[Ref.: #69480]	gram-positive	yes	86.2	no
[Ref.: #69480]	anaerobic	no	99.225	no
[Ref.: #69480]	halophile	no	96.823	no
[Ref.: #69480]	spore-forming	yes	93.46	yes
[Ref.: #69480]	glucose-util	yes	89.622	no
[Ref.: #69480]	aerobic	yes	92.418	no
[Ref.: #69480]	flagellated	no	97.56	no
[Ref.: #69480]	thermophile	no	98.936	yes
[Ref.: #69480]	motile	no	93.478	no
[Ref.: #69480]	glucose-ferment	no	90.378	no

Availability in culture collections External links

[Ref.: #9551]

Culture collection no.

DSM 40449, ATCC 12309, CBS 370.58, CBS 690.72, ETH 31546, IFO 13389, IFO 3337, ISP 5449, JCM 4119, JCM 4746, KCC S-0119, KCC S-0746, NBRC 13389, NBRC 3337, NRRL B-1698, PSA 218, RIA 1350, VKM Ac-1760, BCRC 13668, CFBP 4540, CGMCC 4.1606, CIP 105123, KACC 20133, VTT E-042624, CCM 3113, KCC S-0244

[Ref.: #84230]

SI-ID 39003

References

#9551

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40449

#19456

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39199 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84230

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39003.1 )

#118927 Collection of Institut Pasteur ; Curators of the CIP; CIP 105123
* These data were automatically processed and therefore are not curated

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Streptomyces diastatochromogenes strain ATCC 12309

Streptomyces diastatochromogenes strain ATCC 12309

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