Jeotgalibacillus alimentarius YKJ-13 is a facultative anaerobe, spore-forming, Gram-variable bacterium that forms irregular colonies and has a orange-yellow pigmentation.
pigmented colony-forming rod-shaped motile Gram-variable spore-forming facultative anaerobe Bacteria 16S sequence genome sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Caryophanaceae |
| Genus Jeotgalibacillus |
| Species Jeotgalibacillus alimentarius |
| Full scientific name Jeotgalibacillus alimentarius Yoon et al. 2001 |
| @ref | Colony color | Colony shape | Medium used | Hemolysis ability | |
|---|---|---|---|---|---|
| 23065 | orange-yellow | irregular | marine agar | ||
| 116238 | 0 |
| @ref | Production | Color | |
|---|---|---|---|
| 23065 | orange-yellow |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7754 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 23065 | Marine agar (MA) | ||||
| 33775 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116238 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 7754 | positive | growth | 30 | |
| 23065 | positive | optimum | 30.0-35.0 | |
| 23065 | maximum | 45.0-50.0 | ||
| 23065 | positive | growth | 37.0 | |
| 23065 | positive | growth | 30.0 | |
| 23065 | negative | growth | 50.0 | |
| 23065 | negative | growth | 4.0 | |
| 23065 | positive | growth | 45.0 | |
| 23065 | positive | growth | 10.0 | |
| 33775 | positive | growth | 30 | |
| 67770 | positive | growth | 30 | |
| 116238 | positive | growth | 22-45 | |
| 116238 | negative | growth | 10 | |
| 116238 | negative | growth | 55 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 23065 | A11 | A1alpha L-Lys-direct |
| 67770 | Observationquinones: MK-7, MK-8 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 23065 | casein | + | hydrolysis | ||
| 23065 | 17057 ChEBI | cellobiose | - | builds acid from | |
| 116238 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 23065 | 15824 ChEBI | D-fructose | + | builds acid from | |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 23065 | 12936 ChEBI | D-galactose | + | builds acid from | |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 23065 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 23065 | 16899 ChEBI | D-mannitol | + | builds acid from | |
| 23065 | 16024 ChEBI | D-mannose | - | builds acid from | |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 23065 | 16988 ChEBI | D-ribose | + | builds acid from | |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 23065 | 17924 ChEBI | D-sorbitol | - | builds acid from | |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 23065 | 16551 ChEBI | D-trehalose | + | builds acid from | |
| 23065 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 23065 | 4853 ChEBI | esculin | + | hydrolysis | |
| 116238 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 23065 | 5291 ChEBI | gelatin | + | hydrolysis | |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 116238 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 23065 | 17368 ChEBI | hypoxanthine | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 23065 | 30849 ChEBI | L-arabinose | - | builds acid from | |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 23065 | 62345 ChEBI | L-rhamnose | - | builds acid from | |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 23065 | 17716 ChEBI | lactose | - | builds acid from | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 23065 | 17306 ChEBI | maltose | + | builds acid from | |
| 23065 | 6731 ChEBI | melezitose | + | builds acid from | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 23065 | 28053 ChEBI | melibiose | + | builds acid from | |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 23065 | 17268 ChEBI | myo-inositol | - | builds acid from | |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 23065 | 17632 ChEBI | nitrate | + | reduction | |
| 116238 | 17632 ChEBI | nitrate | + | reduction | |
| 116238 | 17632 ChEBI | nitrate | - | respiration | |
| 116238 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 23065 | 16634 ChEBI | raffinose | + | builds acid from | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 23065 | 15963 ChEBI | ribitol | - | builds acid from | |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 23065 | 17164 ChEBI | stachyose | - | builds acid from | |
| 23065 | 28017 ChEBI | starch | - | hydrolysis | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 23065 | 17992 ChEBI | sucrose | + | builds acid from | |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 23065 | 53426 ChEBI | tween 80 | + | hydrolysis | |
| 23065 | 18186 ChEBI | tyrosine | - | hydrolysis | |
| 23065 | 16199 ChEBI | urea | - | hydrolysis | |
| 23065 | 15318 ChEBI | xanthine | - | hydrolysis | |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 116238 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116238 | amylase | + | ||
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 116238 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116238 | caseinase | + | 3.4.21.50 | |
| 23065 | catalase | + | 1.11.1.6 | |
| 116238 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 23065 | cytochrome oxidase | + | 1.9.3.1 | |
| 116238 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116238 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 116238 | gelatinase | + | ||
| 116238 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 116238 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116238 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116238 | ornithine decarboxylase | - | 4.1.1.17 | |
| 116238 | oxidase | - | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 116238 | tween esterase | + | ||
| 23065 | urease | - | 3.5.1.5 | |
| 116238 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116238 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | +/- | +/- | - | - | - | +/- | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Food production | #Seafood | |
| #Engineered | #Food production | #Fermented |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | Enrichment culture | Enrichment culture temperature | |
|---|---|---|---|---|---|---|---|
| 7754 | traditional fermented seafood (jeotgal) | Republic of Korea | KOR | Asia | |||
| 23065 | jeotgal (traditional Korean fermented seafood) | marine agar (Difco) | 30.0 | ||||
| 67770 | Jeotgal, Korean traditional fermented seafood | Republic of Korea | KOR | Asia | |||
| 116238 | Food, Jeotgal, fermented seafood | Republic of Korea | KOR | Asia |
Global distribution of 16S sequence AF281158 (>99% sequence identity) for Jeotgalibacillus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM82944v1 assembly for Jeotgalibacillus alimentarius YKJ-13 | contig | 135826 | 69.34 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7754 | Bacillus kangii 16S ribosomal RNA gene, partial sequence | AF281158 | 1508 | 135826 | ||
| 124043 | Jeotgalibacillus alimentarius isolate Jta26 16S ribosomal RNA gene, partial sequence 16S-23S internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence. | EU723659 | 458 | 135826 | ||
| 124043 | Jeotgalibacillus alimentarius isolate Jta58 16S ribosomal RNA gene, partial sequence 16S-23S internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence. | EU723660 | 655 | 135826 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 95.48 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 70.48 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 88.27 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 91.57 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 74.92 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 95.61 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 87.43 | no |
| 125438 | aerobic | aerobicⓘ | yes | 74.58 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 93.95 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 85.09 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Draft Genome Sequence of Yellow Pigmented Jeotgalibacillus alimentarius JY-13T, the First Halophile Strain of the Genus Jeotgalibacillus. | Yaakop AS, Chan KG, Gan HM, Goh KM | Genome Announc | 10.1128/genomeA.01224-15 | 2015 | |
| Phylogeny | Isolation of Jeotgalibacillus malaysiensis sp. nov. from a sandy beach, and emended description of the genus Jeotgalibacillus. | Yaakop AS, Chan KG, Ee R, Kahar UM, Kon WC, Goh KM | Int J Syst Evol Microbiol | 10.1099/ijs.0.000242 | 2015 | |
| Phylogeny | Domibacillus robiginosus gen. nov., sp. nov., isolated from a pharmaceutical clean room. | Seiler H, Wenning M, Scherer S | Int J Syst Evol Microbiol | 10.1099/ijs.0.044396-0 | 2012 | |
| Phylogeny | Jeotgalibacillus salarius sp. nov., isolated from a marine saltern, and reclassification of Marinibacillus marinus and Marinibacillus campisalis as Jeotgalibacillus marinus comb. nov. and Jeotgalibacillus campisalis comb. nov., respectively. | Yoon JH, Kang SJ, Schumann P, Oh TK | Int J Syst Evol Microbiol | 10.1099/ijs.0.008318-0 | 2009 | |
| Phylogeny | Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Ruger 1983 . as mMrinibacillus marinus gen nov., comb. nov. | Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH, Park YH | Int J Syst Evol Microbiol | 10.1099/00207713-51-6-2087 | 2001 |
| #7754 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18867 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #23065 | J. H. Yoon,N. Weiss,K. C. Lee,I. S. Lee,K. H. Kang,Y. H. Park: Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 . as mMrinibacillus marinus gen nov., comb. nov.. IJSEM 51: 2087 - 2093 2001 ( DOI 10.1099/00207713-51-6-2087 , PubMed 11760951 ) |
| #33775 | ; Curators of the CIP; |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116238 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107405 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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