Name: Streptomyces violaceoruber DSM 40421
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15103

Type strain:

Species: Streptomyces violaceoruber

Culture col. no.: DSM 40421, ATCC 19830, CBS 679.72, IFO 13378, INMI 20-41, ISP 5421, NBRC 13378, RIA 1339, JCM 4739, BCRC 16237, CGMCC 4.1594, KCTC 19065, NCIMB 10042, NRRL B-12348, VKM Ac-98, VTT E-073027

Strain history: KCC S-0739 <-- IFO 13378 <-- SAJ <-- ISP 5421 <-- INMI 20-41.

NCBI tax ID(s): 68174 (species)

Other strains from Streptomyces violaceoruber

Section

Streptomyces violaceoruber DSM 40421 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violaceoruber**
	Full Scientific Name (LPSN)	Streptomyces violaceoruber (Waksman and Curtis 1916) Pridham 1970 (Approved Lists 1980)

	Synonym	Actinopycnidium caeruleum
	Synonym	"Actinomyces* tricolor"*
	Synonym	"Actinomyces* anthocyanicus"*
	Synonym	"Actinomyces* violaceolatus"*
	Synonym	Streptomyces humiferus
	Synonym	Streptomyces anthocyanicus
	Synonym	Streptomyces tricolor
	Synonym	Streptomyces violaceolatus
	Synonym	Streptomyces roseodiastaticus
	Synonym	"Actinomyces* violaceusruber"*
	Synonym	"Actinomyces* coelescens"*
	Synonym	"Actinomyces* roseodiastaticus"*
	Synonym	Streptomyces coelescens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19452]	Colony color	Red
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 2

[Ref.: #19452]	Colony color	Red
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 3

[Ref.: #19452]	Colony color	Red
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 4

[Ref.: #19452]	Colony color	Brown
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 5

[Ref.: #19452]	Colony color	Beige
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 6

[Ref.: #19452]	Colony color	Red
[Ref.: #19452]	Incubation period	10-14 days
[Ref.: #19452]	Cultivation medium used	ISP 7

[Ref.: #19452]	Multicellular complex forming ability	yes
[Ref.: #19452]	Multicellular complex name	Aerial Mycelium
[Ref.: #19452]	Multicellular complex color	Grey
[Ref.: #19452]	Medium Name (multicellularity)	ISP 2

[Ref.: #19452]	Multicellular complex forming ability	yes
[Ref.: #19452]	Multicellular complex name	Aerial Mycelium
[Ref.: #19452]	Multicellular complex color	White
[Ref.: #19452]	Medium Name (multicellularity)	ISP 3

[Ref.: #19452]	Multicellular complex forming ability	no
[Ref.: #19452]	Medium Name (multicellularity)	ISP 4

[Ref.: #19452]	Multicellular complex forming ability	yes
[Ref.: #19452]	Multicellular complex name	Aerial Mycelium
[Ref.: #19452]	Multicellular complex color	White
[Ref.: #19452]	Medium Name (multicellularity)	ISP 5

[Ref.: #19452]	Multicellular complex forming ability	no
[Ref.: #19452]	Medium Name (multicellularity)	ISP 6

[Ref.: #19452]	Multicellular complex forming ability	yes
[Ref.: #19452]	Multicellular complex name	Aerial Mycelium
[Ref.: #19452]	Multicellular complex color	White
[Ref.: #19452]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9530]

Culture medium composition

expand / minimize

[Ref.: #19452]

Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9530]	growth	28 °C
[Ref.: #19452]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9530]	Temperature range	mesophilic
[Ref.: #19452]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19452]	Spore description	Formation of spore chains: rectiflixibilis, spore surface: smooth
[Ref.: #19452]	Type of spore	spore
[Ref.: #19452]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19452]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19452]	313	+	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AY999786 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	991
Soil Samples	2201
Animal Samples	1970
Plant Samples	240
Total Samples	5402

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9530]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19452]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces coelescens 16S ribosomal RNA, partial sequence	AF503496	1515	ENA	68189 tax ID	*
[Ref.: #20218]	Streptomyces coelescens strain DSM 40421 16S ribosomal RNA gene, partial sequence	GU383132	780	ENA	68189 tax ID	*
[Ref.: #20218]	Streptomyces coelescens strain JCM 4739 16S ribosomal RNA gene, partial sequence	AY999761	1429	ENA	68189 tax ID	*
[Ref.: #20218]	Streptomyces coelescens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4739	D44323	121	ENA	68189 tax ID	*
[Ref.: #20218]	Streptomyces coelescens gene for 16S rRNA, partial sequence, strain: NBRC 13378	AB184365	1478	ENA	68189 tax ID	*
[Ref.: #20218]	Streptomyces coelescens strain NRRL B-12348 16S ribosomal RNA gene, partial sequence	AY999786	1495	ENA	68189 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces anthocyanicus JCM 4739	GCA_014650795	scaffold	GenBank	68174 tax ID
[Ref.: #66792]	Streptomyces coelescens strain JCM 4739	68189.4	wgs	PATRIC	68174 tax ID	*

[Ref.: #67770]

GC-content

72.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces anthocyanicus JCM 4739 NCBI: GCA_014650795.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces coelescens strain JCM 4739 PATRIC: 68189.4
[Ref.: #69480]	gram-positive	yes	89.673	no
[Ref.: #69480]	anaerobic	no	99.117	no
[Ref.: #69480]	halophile	no	91.646	no
[Ref.: #69480]	spore-forming	yes	94.538	no
[Ref.: #69480]	glucose-util	yes	90.123	no
[Ref.: #69480]	thermophile	no	99.02	yes
[Ref.: #69480]	flagellated	no	97.945	no
[Ref.: #69480]	aerobic	yes	93.486	no
[Ref.: #69480]	glucose-ferment	no	89.422	no
[Ref.: #69480]	motile	no	93.374	no

Availability in culture collections External links

[Ref.: #9530]

Culture collection no.

DSM 40421, ATCC 19830, CBS 679.72, IFO 13378, INMI 20-41, ISP 5421, NBRC 13378, RIA 1339, JCM 4739, BCRC 16237, CGMCC 4.1594, KCTC 19065, NCIMB 10042, NRRL B-12348, VKM Ac-98, VTT E-073027

References

#9530

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40421

#19452

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces anthocyanicus JCM 4739

Streptomyces coelescens strain JCM 4739

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