Name: Streptomyces cinereoruber PSAM 192
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15092

Type strain:

Species: Streptomyces cinereoruber

Strain Designation: PSAM 192

Culture col. no.: DSM 40012, ATCC 19740, CBS 479.68, DSM 41512, IFO 12756, ISP 5012, JCM 4205, JCM 4572, KCC S-0205, KCC S-0572, NBRC 12756, RIA 1021, ETH 7451, BCRC 11816, CGMCC 4.1698, KCTC 9706, NCIMB 9797, NRRL 2589, RIA 535, VKM Ac-1860

Strain history: KCC S-0205 <-- J. Nüesch.

NCBI tax ID(s): 67260 (species)

SI-ID 37091

ATCC 19740, IFO 12756, DSM 40012, DSM 41512, JCM 4205, JCM 4572, CCRC 11816, NCIMB 9797, NRRL 2589, NCIB 9797, VKM Ac-1860, CBS 479.68, KCTC 9706, AS 4.1698, NBRC 12756, BCRC 11816, CGMCC 4.1698

Special Collections

Other strains from Streptomyces cinereoruber

Section

Streptomyces cinereoruber PSAM 192 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces cinereoruber**
	Full Scientific Name (LPSN)	Streptomyces cinereoruber Corbaz et al. 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.584

[Ref.: #69480]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9213]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9213]

Culture medium growth

[Ref.: #9213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9213]

Culture medium composition

expand / minimize

[Ref.: #9213]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9213]

Culture medium growth

[Ref.: #9213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9213]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9213]	growth	28 °C
[Ref.: #18463]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.063
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9213]

Name of produced compound

rhodomycin A + B

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18463]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18463]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18463]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18463]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18463]	mannitol ChEBI	-
[Ref.: #18463]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18463]	raffinose ChEBI	-
[Ref.: #18463]	rhamnose ChEBI	-
[Ref.: #18463]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18463]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	rhodomycin A	yes
[Ref.: #67770]	rhodomycin B	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18463]	48	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18463]	172	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9213]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Les Antiques, Alpilles, Provence
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999771 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	54
Soil Samples	718
Animal Samples	76
Plant Samples	123
Total Samples	971

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18463]	Biosafety level	1	German classification
[Ref.: #9213]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces cinereoruber gene for 16S rRNA, partial sequence	AB122744	564	GenBank ENA	67262 tax ID	*
[Ref.: #20218]	Streptomyces cinereoruber subsp. cinereoruber strain JCM 4205 16S ribosomal RNA gene, partial sequence	AY999771	1425	GenBank ENA	67262 tax ID	*
[Ref.: #20218]	Streptomyces cinereoruber gene for 16S ribosomal RNA, partial sequence, strain: JCM 4572	D44240	120	GenBank ENA	67262 tax ID	*
[Ref.: #20218]	Streptomyces cinereoruber gene for 16S rRNA, partial sequence, strain: NBRC 12756	AB184121	1466	GenBank ENA	67262 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces cinereoruber DSM 41512	GCA_011758705	contig	GenBank ENA	67260 tax ID
[Ref.: #66792]	Streptomyces cinereoruber JCM4205	GCA_019880525	contig	GenBank ENA	67260 tax ID	*
[Ref.: #66792]	Streptomyces cinereoruber strain ATCC 19740	67260.4	complete	PATRIC	67260 tax ID	*
[Ref.: #66792]	Streptomyces cinereoruber strain DSM 41512	67260.5	wgs	PATRIC	67260 tax ID	*
[Ref.: #66792]	Streptomyces cinereoruber subsp. cinereoruber strain JCM 4205	67262.3	wgs	PATRIC	67262 tax ID	*
[Ref.: #66792]	Streptomyces cinereoruber subsp. cinereoruber strain JCM4205	67262.4	wgs	PATRIC	67262 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces cinereoruber ATCC 19740 NCBI: GCA_009299385.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces cinereoruber ATCC 19740 NCBI: GCA_009299385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.584	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.886	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.497	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.063	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #9213]

Culture collection no.

DSM 40012, ATCC 19740, CBS 479.68, DSM 41512, IFO 12756, ISP 5012, JCM 4205, JCM 4572, KCC S-0205, KCC S-0572, NBRC 12756, RIA 1021, ETH 7451, BCRC 11816, CGMCC 4.1698, KCTC 9706, NCIMB 9797, NRRL 2589, RIA 535, VKM Ac-1860

[Ref.: #84198]

SI-ID 37091

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Screening of Gastrointestinal Lipase Inhibitors Produced by Microorganisms Isolated from Soil and Lake Sediments.	Camacho-Ruiz MA, Ordaz E, Kirchmayr MR, Esquivel-Solis H, Asaff-Torres A, Mateos-Diaz JC, Carrire F, Rodriguez JA	Int Microbiol	10.1007/s10123-019-00107-y	2019	*
Phylogeny	Streptomyces fukangensis sp. nov., a novel alkaliphilic actinomycete isolated from a saline-alkaline soil.	Zhang YG, Wang HF, Liu Q, Hozzein WN, Wadaan MA, Cheng J, Chen YJ, Zhang YM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-0045-8	2013	*

References

#9213

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40012

#18463

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84198

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37091.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces cinereoruber ATCC 19740

Streptomyces cinereoruber ATCC 19740

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