Name: Streptomyces chryseus DSM 40420
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15091

Type strain:

Species: Streptomyces chryseus

Culture col. no.: DSM 40420, ATCC 19829, CBS 678.72, IFO 13377, INMI 1007 B, ISP 5420, NBRC 13377, RIA 1338, JCM 4737, BCRC 16236, CGMCC 4.1694, NCIMB 10041, NRRL B-12347, VKM Ac-200

Strain history: KCC S-0737 <-- IFO 13377 <-- SAJ <-- ISP 5420 <-- N. A. Krassilnikov 1007-B.

NCBI tax ID(s): 68186 (species)

SI-ID 37114

ATCC 19829, IFO 13377, DSM 40420, JCM 4737, NCIMB 10041, NRRL B-12347, VKM Ac-200, CBS 678.72, AS 4.1694, NBRC 13377, BCRC 16236, CCRC 16236, NCIB 10041, CGMCC 4.1694

Section

Streptomyces chryseus DSM 40420 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces chryseus**
	Full Scientific Name (LPSN)	Streptomyces chryseus (Krassilnikov et al. 1965) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces chryseus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.313

[Ref.: #19451]	Colony color	Yellow orange
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 2

[Ref.: #19451]	Colony color	Rape yellow
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 3

[Ref.: #19451]	Colony color	Beige
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 4

[Ref.: #19451]	Colony color	Beige
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 5

[Ref.: #19451]	Colony color	Beige
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 6

[Ref.: #19451]	Colony color	Lemon yellow
[Ref.: #19451]	Incubation period	10-14 days
[Ref.: #19451]	Cultivation medium used	ISP 7

[Ref.: #19451]	Multicellular complex forming ability	yes
[Ref.: #19451]	Multicellular complex name	Aerial Mycelium
[Ref.: #19451]	Multicellular complex color	Cream
[Ref.: #19451]	Medium Name (multicellularity)	ISP 2

[Ref.: #19451]	Multicellular complex forming ability	yes
[Ref.: #19451]	Multicellular complex name	Aerial Mycelium
[Ref.: #19451]	Multicellular complex color	Cream
[Ref.: #19451]	Medium Name (multicellularity)	ISP 3

[Ref.: #19451]	Multicellular complex forming ability	yes
[Ref.: #19451]	Multicellular complex name	Aerial Mycelium
[Ref.: #19451]	Multicellular complex color	Cream
[Ref.: #19451]	Medium Name (multicellularity)	ISP 4

[Ref.: #19451]	Multicellular complex forming ability	no
[Ref.: #19451]	Medium Name (multicellularity)	ISP 5

[Ref.: #19451]	Multicellular complex forming ability	no
[Ref.: #19451]	Medium Name (multicellularity)	ISP 6

[Ref.: #19451]	Multicellular complex forming ability	no
[Ref.: #19451]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9529]	growth	28 °C
[Ref.: #19451]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9529]	Temperature range	mesophilic
[Ref.: #19451]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19451]	312	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19451]	362	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AY999787 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	126
Soil Samples	953
Animal Samples	103
Plant Samples	429
Total Samples	1611

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9529]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19451]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces chryseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4737	D44321	120	ENA	68186 tax ID	*
[Ref.: #20218]	Streptomyces chryseus gene for 16S rRNA, partial sequence, strain: NBRC 13377	AB184876	1477	ENA	68186 tax ID	*
[Ref.: #20218]	Streptomyces chryseus strain NRRL B-12347 16S ribosomal RNA gene, partial sequence	AY999787	1494	ENA	68186 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces chryseus DSM 40420	GCA_005981935	contig	GenBank	68186 tax ID
[Ref.: #66792]	Streptomyces chryseus JCM 4737	GCA_014650755	contig	GenBank	68186 tax ID	*
[Ref.: #66792]	Streptomyces chryseus strain DSM 40420	68186.4	wgs	PATRIC	68186 tax ID	*
[Ref.: #66792]	Streptomyces chryseus strain JCM 4737	68186.5	wgs	PATRIC	68186 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces chryseus strain JCM 4737 PATRIC: 68186.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces chryseus strain DSM 40420 PATRIC: 68186.4
[Ref.: #69480]	gram-positive	yes	91.316	no
[Ref.: #69480]	anaerobic	no	99.06	no
[Ref.: #69480]	halophile	no	94.056	no
[Ref.: #69480]	spore-forming	yes	94.451	no
[Ref.: #69480]	glucose-util	yes	89.404	no
[Ref.: #69480]	thermophile	no	96.162	yes
[Ref.: #69480]	flagellated	no	98.419	no
[Ref.: #69480]	aerobic	yes	91.449	no
[Ref.: #69480]	glucose-ferment	no	91.05	no
[Ref.: #69480]	motile	no	95.077	no

Availability in culture collections External links

[Ref.: #9529]

Culture collection no.

DSM 40420, ATCC 19829, CBS 678.72, IFO 13377, INMI 1007 B, ISP 5420, NBRC 13377, RIA 1338, JCM 4737, BCRC 16236, CGMCC 4.1694, NCIMB 10041, NRRL B-12347, VKM Ac-200

[Ref.: #84197]

SI-ID 37114

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces altiplanensis sp. nov., an alkalitolerant species isolated from Chilean Altiplano soil, and emended description of Streptomyces chryseus (Krasil'nikov et al. 1965) Pridham 1970.	Cortes-Albayay C, Dorador C, Schumann P, Schniete JK, Herron P, Andrews B, Asenjo J, Nouioui I	Int J Syst Evol Microbiol	10.1099/ijsem.0.003525	2019	*
Phylogeny	Streptomyces hypolithicus sp. nov., isolated from an Antarctic hypolith community.	Le Roes-Hill M, Rohland J, Meyers PR, Cowan DA, Burton SG	Int J Syst Evol Microbiol	10.1099/ijs.0.007971-0	2009	*
Genetics	Structure of anionic carbohydrate-containing cell wall polymers in several representatives of the order actinomycetales.	Kozlova YI, Streshinskaya GM, Shashkov AS, Evtushenko LI, Gavrish EY, Naumova IB	Biochemistry (Mosc)	BCM65101432	2000	*

References

#9529

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40420

#19451

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84197

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37114.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces chryseus strain JCM 4737

Streptomyces chryseus strain DSM 40420

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