Name: Streptomyces chrestomyceticus BE-508
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15088

Type strain:

Species: Streptomyces chrestomyceticus

Strain Designation: BE-508

Culture col. no.: DSM 40545, ATCC 14947, CBS 745.72, DSM 40820, IFO 13444, IMRU 3835, ISP 5545, NBRC 13444, NCIB 8995, RIA 1405, JCM 4735, KCC S-0735, BCRC 12173, CGMCC 4.1657, MTCC 6922, NCAIM B.01478, NCIMB 10999, NCIMB 8995, NRRL B-3293, NRRL B-3310, NRRL B-3672

Strain history: KCC S-0735 <-- IFO 13444 <-- SAJ <-- ISP 5545 <-- IMRU 3835 <-- A. Di Marco.

NCBI tax ID(s): 1306181 (strain), 68185 (species)

SI-ID 36211

ATCC 14947, IFO 13444, DSM 40545, DSM 40820, NCIB 8995, JCM 4735, CCRC 12173, NCIMB 8995, NRRL B-3293, NRRL B-3310, NRRL B-3672, NCIMB10999, AS 4.1657, NBRC 13444, BCRC 12173, NCAIM B.01478, CGMCC 4.1657, CBS 745.72

Other strains from Streptomyces chrestomyceticus

S. chrestomyceticus DSM 41224, IMRU 3910
S. chrestomyceticus JCM 4540

Section

Streptomyces chrestomyceticus BE-508 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces chrestomyceticus**
	Full Scientific Name (LPSN)	Streptomyces chrestomyceticus Canevazzi and Scotti 1959 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.404

[Ref.: #19474]	Colony color	Yellow
[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 2

[Ref.: #19474]	Colony color	Beige
[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 4

[Ref.: #19474]	Colony color	Beige
[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 5

[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 3

[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 6

[Ref.: #19474]	Incubation period	10-14 days
[Ref.: #19474]	Cultivation medium used	ISP 7

[Ref.: #19474]	Multicellular complex forming ability	yes
[Ref.: #19474]	Multicellular complex name	Aerial Mycelium
[Ref.: #19474]	Multicellular complex color	White
[Ref.: #19474]	Medium Name (multicellularity)	ISP 2

[Ref.: #19474]	Multicellular complex forming ability	yes
[Ref.: #19474]	Multicellular complex name	Aerial Mycelium
[Ref.: #19474]	Multicellular complex color	White
[Ref.: #19474]	Medium Name (multicellularity)	ISP 3

[Ref.: #19474]	Multicellular complex forming ability	yes
[Ref.: #19474]	Multicellular complex name	Aerial Mycelium
[Ref.: #19474]	Multicellular complex color	Beige
[Ref.: #19474]	Medium Name (multicellularity)	ISP 4

[Ref.: #19474]	Multicellular complex forming ability	yes
[Ref.: #19474]	Multicellular complex name	Aerial Mycelium
[Ref.: #19474]	Multicellular complex color	Beige
[Ref.: #19474]	Medium Name (multicellularity)	ISP 5

[Ref.: #19474]	Multicellular complex forming ability	no
[Ref.: #19474]	Medium Name (multicellularity)	ISP 6

[Ref.: #19474]	Multicellular complex forming ability	yes
[Ref.: #19474]	Multicellular complex name	Aerial Mycelium
[Ref.: #19474]	Multicellular complex color	White
[Ref.: #19474]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9630]	growth	28 °C
[Ref.: #19474]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9630]	Temperature range	mesophilic
[Ref.: #19474]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19474]	Spore description	Formation of spore chains (spirales)(Sp), spore surface smooth
[Ref.: #19474]	Type of spore	spore
[Ref.: #19474]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9630]	Name of produced compound	aminocidin
[Ref.: #9630]	Name of produced compound	neomycin E
[Ref.: #9630]	Name of produced compound	neomycin F
[Ref.: #9630]	Name of produced compound	paramomycin
[Ref.: #19474]	Name of produced compound	Pyrrolostatin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19474]		NaCl		maximum	5	%

[Ref.: #19474]	Name of tolerated compound	Lysozyme
[Ref.: #19474]	Tolerance percentage	1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19474]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19474]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19474]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19474]	mannitol ChEBI	+
[Ref.: #19474]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19474]	raffinose ChEBI	-
[Ref.: #19474]	rhamnose ChEBI	-
[Ref.: #19474]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19474]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	neomycin E	yes
[Ref.: #67770]	neomycin F	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19474]	334	+	+	+	+	+	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9630]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19474]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces chrestomyceticus strain CGMCC 4.1657 16S ribosomal RNA gene, partial sequence	JN566025	1378	ENA	1306181 tax ID	*
[Ref.: #20218]	Streptomyces chrestomyceticus 16S rRNA gene, type strain DSM 40545T	AJ621609	1497	ENA	1306181 tax ID	*
[Ref.: #20218]	Streptomyces chrestomyceticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4735	D44319	121	ENA	1306181 tax ID	*
[Ref.: #20218]	Streptomyces chrestomyceticus gene for 16S rRNA, partial sequence, strain: NBRC 13444	AB184407	1480	ENA	1306181 tax ID	*
[Ref.: #20218]	Streptomyces chrestomyceticus JCM 4735 strain NRRL B-3293 16S ribosomal RNA gene, partial sequence	DQ026633	1483	ENA	1306181 tax ID	*
[Ref.: #20218]	Streptomyces chrestomyceticus JCM 4735 strain NRRL B-3310 16S ribosomal RNA gene, partial sequence	AY999795	1457	ENA	1306181 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces chrestomyceticus JCM 4735 NBRC 13444	GCA_003865135	contig	GenBank	1306181 tax ID
[Ref.: #66792]	Streptomyces chrestomyceticus JCM 4735	GCA_001315465	contig	GenBank	1306181 tax ID	*
[Ref.: #66792]	Streptomyces chrestomyceticus JCM 4735	1306181.9	wgs	PATRIC	1306181 tax ID	*
[Ref.: #66792]	Streptomyces chrestomyceticus JCM 4735 strain NBRC 13444	1306181.8	wgs	PATRIC	1306181 tax ID	*
[Ref.: #66792]	Streptomyces chrestomyceticus JCM 4735	2734481989	draft	JGI IMG/M	1306181 tax ID	*

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GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces chrestomyceticus JCM 4735 strain NBRC 13444 PATRIC: 1306181.8
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces chrestomyceticus JCM 4735 PATRIC: 1306181.9
[Ref.: #69480]	motile	no	90.663	no
[Ref.: #69480]	gram-positive	yes	89.441	no
[Ref.: #69480]	anaerobic	no	94.706	no
[Ref.: #69480]	halophile	no	92.5	no
[Ref.: #69480]	spore-forming	yes	58.907	yes
[Ref.: #69480]	thermophile	no	99.016	yes
[Ref.: #69480]	glucose-util	yes	87.301	yes
[Ref.: #69480]	aerobic	yes	94.632	no
[Ref.: #69480]	flagellated	no	97.624	no
[Ref.: #69480]	glucose-ferment	no	85.348	no

Availability in culture collections External links

[Ref.: #9630]

Culture collection no.

DSM 40545, ATCC 14947, CBS 745.72, DSM 40820, IFO 13444, IMRU 3835, ISP 5545, NBRC 13444, NCIB 8995, RIA 1405, JCM 4735, KCC S-0735, BCRC 12173, CGMCC 4.1657, MTCC 6922, NCAIM B.01478, NCIMB 10999, NCIMB 8995, NRRL B-3293, NRRL B-3310, NRRL B-3672

[Ref.: #84194]

SI-ID 36211

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid.	Sarmin NIM, Tan GYA, Franco CMM, Edrada-Ebel R, Latip J, Zin NM	Int J Syst Evol Microbiol	10.1099/ijs.0.047878-0	2013	*

References

#9630

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40545

#19474

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84194

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36211.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces chrestomyceticus JCM 4735 strain NBRC 13444

Streptomyces chrestomyceticus JCM 4735

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