Streptomyces canus (DSM 40017, ATCC 12237, CBS 475.68)

Name: Streptomyces canus (DSM 40017, ATCC 12237, CBS 475.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15068

Type strain

Strain Designation 456786

Culture col. no. DSM 40017 ATCC 12237 CBS 475.68 IFO 12752 ISP 5017 14 more

NCBI tax ID(s) 58343

Special Collections DSMZ JCM Wink compendium

History <- E.B. Shirling, ISP <- K.E. Crook, Bristol Labs., 456786 KCC S-0212 <-- IFM 1092 <-- Bristol Labs.; BL 456786.

Links

Streptomyces canus 456786 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 128968

LMG 19329,ATCC 12237,ATCC 19737,CCRC 13652,DSM 40017,IFO 12752,JCM 4212,JCM 4569,NCIMB 9627,NRRL B-1989,NRRL B-3980,VKM Ac-1011,IFO5017,CBS 475.68,AS 4.1468,NBRC 12752,NCIB9801,BCRC 13652,NCIB 9627,CGMCC 4.1468

@ref 20215

Last LPSN update 2026-02-09 11:21:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces canus

Full scientific name Streptomyces canus Heinemann et al. 1953 (Approved Lists 1980)

Synonyms (1)

Streptomyces ciscaucasicus

BacDive ID	Other strains from **Streptomyces canus** (1)	Type strain
16218	S. canus DSM 40275, ATCC 23626, ATCC 23918, CBS 839.68, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.7
125439		91.9

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9218	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9218	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
9218	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
9218	ISP 5 MEDIUM (DSMZ Medium 993)	Medium recipe at MediaDive	Name: ISP 5 MEDIUM (DSMZ Medium 993) Composition: Agar 20.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l L-Asparagine 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9218	positive	growth	28	mesophilic
18465	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.2

Spore formation

@ref	Spore formation	Confidence
125438		90.626
125439		93.6

Compound production

@ref	Compound
9218	amphomycin
20216	Amphomycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18465	NaCl	positive	maximum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18465	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
18465	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18465	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18465	29864 ChEBI	mannitol	+
18465	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18465	16634 ChEBI	raffinose	-
18465	26546 ChEBI	rhamnose	+
18465	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18465	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
67770		amphomycin
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18465	+	+	-	-	+	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9218	soil		USA	USA	North America
67770	Soil	near Syracuse, NY	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9218	1	Risk group (German classification) According to TRBA 466
18465	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM151414v1 assembly for Streptomyces canus DSM 40017	scaffold	GCA_001514145	58343.3	2684622646	58343	52.7

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces canus 16S-23S ribosomal RNA gene spacer, partial sequence	U93344	302	58343
20218	Streptomyces canus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4569	D44238	120	58343
20218	Streptomyces canus gene for 16S rRNA, partial sequence, strain: NBRC 12752	AB184118	1477	58343
20218	Streptomyces canus strain NRRL B-1989 16S ribosomal RNA gene, partial sequence	AY999775	1494	58343

GC content

@ref	GC-content (mol%)	Method
67770	70.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces canus DSM 40017
NCBI: GCA_001514145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.60	no
125439	motility	BacteriaNetⓘ	no	91.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces canus strain DSM 40017
PATRIC: 58343.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.17	no
125438	anaerobic	anaerobicⓘ	no	96.49	no
125438	spore-forming	spore-formingⓘ	yes	90.63	no
125438	aerobic	aerobicⓘ	yes	89.44	no
125438	thermophilic	thermophileⓘ	no	95.47	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region.	Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y.	Pol J Microbiol	10.33073/pjm-2021-008	2021
Genetics	Genome mining for drug discovery: cyclic lipopeptides related to daptomycin.	Baltz RH.	J Ind Microbiol Biotechnol	10.1093/jimb/kuab020	2021
	Intimate relationships among actinomycetes and mycolic acid-containing bacteria.	Kato M, Asamizu S, Onaka H.	Sci Rep	10.1038/s41598-022-11406-2	2022
	A genetics-free method for high-throughput discovery of cryptic microbial metabolites.	Xu F, Wu Y, Zhang C, Davis KM, Moon K, Bushin LB, Seyedsayamdost MR.	Nat Chem Biol	10.1038/s41589-018-0193-2	2019
Phylogeny	Streptomyces ziwulingensis sp. nov., isolated from grassland soil.	Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.043026-0	2012

References

#9218	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40017
#18465	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces canus (DSM 40017, ATCC 12237, CBS 475.68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001514145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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