Porphyromonas macacae CCUG 41933 is an anaerobe, mesophilic prokaryote that was isolated from Subcutaneous abscess of cat.
anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Bacteroidota |
| Class Bacteroidia |
| Order Bacteroidales |
| Family Porphyromonadaceae |
| Genus Porphyromonas |
| Species Porphyromonas macacae |
| Full scientific name Porphyromonas macacae (Slots and Genco 1980) Love 1995 |
| Synonyms (4) |
| BacDive ID | Other strains from Porphyromonas macacae (1) | Type strain |
|---|---|---|
| 12504 | P. macacae 7728-L6C, DSM 20710, ATCC 33141, CCUG 47703, ... (type strain) |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | NAD metabolism | 94.44 | 17 of 18 | ||
| 66794 | palmitate biosynthesis | 90.91 | 20 of 22 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | propanol degradation | 85.71 | 6 of 7 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | starch degradation | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | vitamin B12 metabolism | 79.41 | 27 of 34 | ||
| 66794 | tetrahydrofolate metabolism | 78.57 | 11 of 14 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | heme metabolism | 71.43 | 10 of 14 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | photosynthesis | 71.43 | 10 of 14 | ||
| 66794 | threonine metabolism | 70 | 7 of 10 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | purine metabolism | 68.09 | 64 of 94 | ||
| 66794 | glutamate and glutamine metabolism | 67.86 | 19 of 28 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | pyrimidine metabolism | 66.67 | 30 of 45 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | isoleucine metabolism | 62.5 | 5 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | gluconeogenesis | 62.5 | 5 of 8 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | phenylalanine metabolism | 61.54 | 8 of 13 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | methylglyoxal degradation | 60 | 3 of 5 | ||
| 66794 | hydrogen production | 60 | 3 of 5 | ||
| 66794 | aspartate and asparagine metabolism | 55.56 | 5 of 9 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 53.85 | 7 of 13 | ||
| 66794 | lipid metabolism | 51.61 | 16 of 31 | ||
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | ||
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | lysine metabolism | 50 | 21 of 42 | ||
| 66794 | citric acid cycle | 50 | 7 of 14 | ||
| 66794 | non-pathway related | 47.37 | 18 of 38 | ||
| 66794 | tryptophan metabolism | 47.37 | 18 of 38 | ||
| 66794 | methionine metabolism | 46.15 | 12 of 26 | ||
| 66794 | proline metabolism | 45.45 | 5 of 11 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | oxidative phosphorylation | 39.56 | 36 of 91 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | urea cycle | 38.46 | 5 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | ketogluconate metabolism | 37.5 | 3 of 8 | ||
| 66794 | arginine metabolism | 37.5 | 9 of 24 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | molybdenum cofactor biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | UDP-GlcNAc biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | valine metabolism | 33.33 | 3 of 9 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfate reduction | 30.77 | 4 of 13 | ||
| 66794 | Entner Doudoroff pathway | 30 | 3 of 10 | ||
| 66794 | reductive acetyl coenzyme A pathway | 28.57 | 2 of 7 | ||
| 66794 | ubiquinone biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | cysteine metabolism | 27.78 | 5 of 18 | ||
| 66794 | ascorbate metabolism | 27.27 | 6 of 22 | ||
| 66794 | metabolism of disaccharids | 27.27 | 3 of 11 | ||
| 66794 | degradation of sugar alcohols | 25 | 4 of 16 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | degradation of sugar acids | 24 | 6 of 25 | ||
| 66794 | leucine metabolism | 23.08 | 3 of 13 | ||
| 66794 | glutathione metabolism | 21.43 | 3 of 14 | ||
| 66794 | degradation of pentoses | 21.43 | 6 of 28 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Felidae (Cat) | |
| #Host Body-Site | #Other | #Wound | |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
Global distribution of 16S sequence AB547666 (>99% sequence identity) for Porphyromonas macacae subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | 57530_F01 assembly for Porphyromonas macacae NCTC11632 | contig | 28115 | 77.55 | ||||
| 67770 | ASM61438v1 assembly for Porphyromonas macacae JCM 15984 | contig | 1236521 | 49.15 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 42 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 90.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.60 | no |
| 125439 | motility | BacteriaNetⓘ | no | 70.10 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 94.40 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 86.65 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.22 | no |
| 125438 | aerobic | aerobicⓘ | no | 92.06 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.83 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 88.60 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Relationship between aging and periodontal disease severity in gauge-raised cynomolgus monkeys (Macaca fascicularis). | Sone T, Komaki M, Sankai T, Hiramine H, Watanabe K, Hamada N, Kodama T. | Exp Anim | 10.1538/expanim.23-0141 | 2024 | ||
| Enzymology | Detection of Porphyromonas gingivalis from saliva by PCR by using a simple sample-processing method. | Matto J, Saarela M, Alaluusua S, Oja V, Jousimies-Somer H, Asikainen S. | J Clin Microbiol | 10.1128/jcm.36.1.157-160.1998 | 1998 | |
| Impact of Periodontal Disease on the Oral Microbiome of Cats. | Thomson P, Santibanez R, Garrido D, Iturriaga MP, Flores C. | Curr Microbiol | 10.1007/s00284-025-04216-y | 2025 | ||
| Lipoteichoic acid from a canine probiotic strain Lacticaseibacillus rhamnosus possesses anti-biofilm capacity against clinically isolated canine periodontopathic Porphyromonas species. | Park S, Shin J, Jun W, Lee D, Kim S, Ha DU, Im J, Han SH. | Microb Pathog | 10.1016/j.micpath.2025.107660 | 2025 | ||
| Antimicrobial susceptibility of Porphyromonas spp. isolated from dogs with periodontal disease in South Korea. | Kim T, Choi YD, Hur W, Lee SW, La TM. | Front Vet Sci | 10.3389/fvets.2025.1684907 | 2025 | ||
| Erythritol inhibits the growth of periodontal-disease-associated bacteria isolated from canine oral cavity. | Shimizu M, Miyawaki S, Kuroda T, Umeta M, Kawabe M, Watanabe K. | Heliyon | 10.1016/j.heliyon.2022.e10224 | 2022 | ||
| Volatile Sulfur Compounds Produced by the Anaerobic Bacteria Porphyromonas spp. Isolated from the Oral Cavities of Dogs. | Ito N, Itoh N, Kameshima S. | Vet Sci | 10.3390/vetsci10080503 | 2023 | ||
| Microbial Composition of Extracted Dental Alveoli in Dogs with Advanced Periodontitis. | Sakarnyte L, Mockeliunas R, Siugzdiniene R, Merkeviciene L, Virgailis M, Dailidaviciene J, Streimikyte-Mockeliune Z, Ruzauskas M. | Microorganisms | 10.3390/microorganisms12071455 | 2024 | ||
| Evaluation of the antibacterial effect of Epigallocatechin gallate on the major pathogens of canine periodontal disease and therapeutic effects on periodontal disease mice. | Song P, Hao Y, Lin D, Jin Y, Lin J. | Front Microbiol | 10.3389/fmicb.2023.1329772 | 2023 | ||
| In vitro effectiveness of pomegranate extract present in pet oral hygiene products against canine oral bacterial species. | Stephen AS, Nicolas CS, Lloret F, Allaker RP. | Vet World | 10.14202/vetworld.2022.1714-1718 | 2022 | ||
| HmuY proteins of the Porphyromonas genus show diversity in heme-binding properties. | Smiga M, Olczak T. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1560779 | 2025 | ||
| cAMP-independent Crp homolog adds to the multi-layer regulatory network in Porphyromonas gingivalis. | Smiga M, Roszkiewicz E, Slezak P, Tracz M, Olczak T. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1535009 | 2025 | ||
| Erythritol alters phosphotransferase gene expression and inhibits the in vitro growth of Staphylococcus coagulans isolated from canines with pyoderma. | Onishi-Sakamoto S, Fujii T, Watanabe K, Makida R, Iyori K, Toyoda Y, Tochio T, Nishifuji K. | Front Vet Sci | 10.3389/fvets.2023.1272595 | 2023 | ||
| Pathogenicity | OHMI: the ontology of host-microbiome interactions. | He Y, Wang H, Zheng J, Beiting DP, Masci AM, Yu H, Liu K, Wu J, Curtis JL, Smith B, Alekseyenko AV, Obeid JS. | J Biomed Semantics | 10.1186/s13326-019-0217-1 | 2019 | |
| Postbiotic Lactiplantibacillus plantarum CECT 9161 Influences the Canine Oral Metagenome and Reduces Plaque Biofilm Formation. | Florit-Ruiz A, Rago L, Rojas A, Guzelkhanova B, Pont-Beltran A, Lamelas A, Solaz-Fuster MC, Martinez-Blanch JF, Lopez ME, Garcia-Lainez G, Rosier BT, Day R, Rubio T, Batchelor R, Nixon SL. | Animals (Basel) | 10.3390/ani15111615 | 2025 | ||
| Pathogenicity | In vitro efficacy of cefovecin against anaerobic bacteria isolated from subgingival plaque of dogs and cats with periodontal disease. | Khazandi M, Bird PS, Owens J, Wilson G, Meyer JN, Trott DJ. | Anaerobe | 10.1016/j.anaerobe.2014.06.001 | 2014 | |
| Pathogenicity | Cannabinoid control of gingival immune activation in chronically SIV-infected rhesus macaques involves modulation of the indoleamine-2,3-dioxygenase-1 pathway and salivary microbiome. | McDew-White M, Lee E, Alvarez X, Sestak K, Ling BJ, Byrareddy SN, Okeoma CM, Mohan M. | EBioMedicine | 10.1016/j.ebiom.2021.103769 | 2022 | |
| Pathogenicity | Occurrence and antimicrobial susceptibility of Porphyromonas spp. and Fusobacterium spp. in dogs with and without periodontitis. | Senhorinho GN, Nakano V, Liu C, Song Y, Finegold SM, Avila-Campos MJ. | Anaerobe | 10.1016/j.anaerobe.2012.04.008 | 2012 | |
| Oral microbial profile variation during canine ligature-induced peri-implantitis development. | Qiao S, Wu D, Wang M, Qian S, Zhu Y, Shi J, Wei Y, Lai H. | BMC Microbiol | 10.1186/s12866-020-01982-6 | 2020 | ||
| The Oral Microbiome across Oral Sites in Cats with Chronic Gingivostomatitis, Periodontal Disease, and Tooth Resorption Compared with Healthy Cats. | Anderson JG, Rojas CA, Scarsella E, Entrolezo Z, Jospin G, Hoffman SL, Force J, MacLellan RH, Peak M, Shope BH, Tsugawa AJ, Ganz HH. | Animals (Basel) | 10.3390/ani13223544 | 2023 | ||
| The Bacteroidetes Q-rule and glutaminyl cyclase activity increase the stability of extracytoplasmic proteins. | Szczesniak K, Veillard F, Scavenius C, Chudzik K, Ferenc K, Bochtler M, Potempa J, Mizgalska D. | mBio | 10.1128/mbio.00980-23 | 2023 | ||
| Study of microbiocenosis of canine dental biofilms. | Kacirova J, Madari A, Mucha R, Fecskeova LK, Mujakic I, Koblizek M, Nemcova R, Madar M. | Sci Rep | 10.1038/s41598-021-99342-5 | 2021 | ||
| Fecal and vaginal microbiota of vaccinated and non-vaccinated pregnant elk challenged with Brucella abortus. | Tibbs-Cortes BW, Rahic-Seggerman FM, Schmitz-Esser S, Boggiatto PM, Olsen S, Putz EJ. | Front Vet Sci | 10.3389/fvets.2024.1334858 | 2024 | ||
| Genetics | Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis. | O'Flynn C, Deusch O, Darling AE, Eisen JA, Wallis C, Davis IJ, Harris SJ. | Genome Biol Evol | 10.1093/gbe/evv220 | 2015 | |
| Enzymology | Engineering the Direct Repeat Sequence of crRNA for Optimization of FnCpf1-Mediated Genome Editing in Human Cells. | Lin L, He X, Zhao T, Gu L, Liu Y, Liu X, Liu H, Yang F, Tu M, Tang L, Ge X, Liu C, Zhao J, Song Z, Qu J, Gu F. | Mol Ther | 10.1016/j.ymthe.2018.08.021 | 2018 | |
| Engineering CRISPR-Cpf1 crRNAs and mRNAs to maximize genome editing efficiency. | Li B, Zhao W, Luo X, Zhang X, Li C, Zeng C, Dong Y. | Nat Biomed Eng | 10.1038/s41551-017-0066 | 2017 | ||
| Molecular, physiological and phylogenetic traits of Lactococcus 936-type phages from distinct dairy environments. | Chmielewska-Jeznach M, Bardowski JK, Szczepankowska AK. | Sci Rep | 10.1038/s41598-018-30371-3 | 2018 | ||
| Pathogenicity | Activities of telithromycin (HMR 3647, RU 66647) compared to those of erythromycin, azithromycin, clarithromycin, roxithromycin, and other antimicrobial agents against unusual anaerobes. | Goldstein EJ, Citron DM, Merriam CV, Warren Y, Tyrrell K. | Antimicrob Agents Chemother | 10.1128/aac.43.11.2801 | 1999 | |
| Pathogenicity | Activities of gemifloxacin (SB 265805, LB20304) compared to those of other oral antimicrobial agents against unusual anaerobes. | Goldstein EJ, Citron DM, Vreni Merriam C, Tyrrell K, Warren Y. | Antimicrob Agents Chemother | 10.1128/aac.43.11.2726 | 1999 | |
| Pathogenicity | Activities of HMR 3004 (RU 64004) and HMR 3647 (RU 66647) compared to those of erythromycin, azithromycin, clarithromycin, roxithromycin, and eight other antimicrobial agents against unusual aerobic and anaerobic human and animal bite pathogens isolated from skin and soft tissue infections in humans. | Goldstein EJ, Citron DM, Hunt Gerardo S, Hudspeth M, Merriam CV. | Antimicrob Agents Chemother | 10.1128/aac.42.5.1127 | 1998 | |
| Phylogeny | Direct identification of bacteria from positive blood cultures by amplification and sequencing of the 16S rRNA gene: evaluation of BACTEC 9240 instrument true-positive and false-positive results. | Qian Q, Tang YW, Kolbert CP, Torgerson CA, Hughes JG, Vetter EA, Harmsen WS, Montgomery SO, Cockerill FR, Persing DH. | J Clin Microbiol | 10.1128/jcm.39.10.3578-3582.2001 | 2001 | |
| Phylogeny | Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. | Leser TD, Amenuvor JZ, Jensen TK, Lindecrona RH, Boye M, Moller K. | Appl Environ Microbiol | 10.1128/aem.68.2.673-690.2002 | 2002 | |
| Pathogenicity | Purification and characterization of a fimbrial protein from Porphyromonas salivosa ATCC 49407. | Koyata Y, Watanabe K, Toyama T, Sasaki H, Hamada N | J Vet Med Sci | 10.1292/jvms.19-0067 | 2019 | |
| Enzymology | Serum antibody responses of cats to soluble whole cell antigens and isolated fimbriae of feline Porphyromonas salivosa (macacae) and associations with periodontal disease. | Norris JM, Love DN | Vet Microbiol | 10.1016/s0378-1135(00)00361-8 | 2001 | |
| Phylogeny | Porphyromonas somerae sp. nov., a pathogen isolated from humans and distinct from porphyromonas levii. | Summanen PH, Durmaz B, Vaisanen ML, Liu C, Molitoris D, Eerola E, Helander IM, Finegold SM. | J Clin Microbiol | 10.1128/jcm.43.9.4455-4459.2005 | 2005 | |
| Phylogeny | Porphyromonas gingivicanis sp. nov. and Porphyromonas crevioricanis sp. nov., isolated from beagles. | Hirasawa M, Takada K | Int J Syst Bacteriol | 10.1099/00207713-44-4-637 | 1994 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #55268 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41933 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive150673.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data