Name: Streptomyces bobili DSM 40056
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15054

Type strain:

Species: Streptomyces bobili

Culture col. no.: DSM 40056, ATCC 23889, ATCC 3310, CBS 675.68, IFO 13199, IMRU 3310, ISP 5056, NBRC 13199, RIA 1116, JCM 4012, BCRC 13671, CBS 419.34, CGMCC 4.1624, IFO 16166, IMET 41372, JCM 4627, NBRC 16166, NRRL B-1338, NRRL B-2097, VKM Ac-1756

Strain history: KCC S-0012 <-- T. Yamaguchi (IAM 0002) <-- ATU <-- ATCC 3310 <-- IMRU 3310.

NCBI tax ID(s): 67280 (species)

SI-ID 92661

ATCC 3310, ATCC 23889, IFO 13199, DSM 40056, JCM 4012, JCM 4627, CCRC 13671, IMET 41372, NRRL B-1338, NRRL B-2097, VKM Ac-1756, IFO 16166, CBS 419.34, AS 4.1624, NBRC 13199, NBRC 16166, BCRC 13671, HAMBI 1059, CGMCC 4.1624, IAM 0002

Other strains from Streptomyces bobili

S. bobili DSM 40481, ATCC 14969, CBS 701.72, ...
S. bobili STH00008(ZIMET), HKI 0008
S. bobili JCM 4330, KCTC 1920

Section

Streptomyces bobili DSM 40056 is a mesophilic bacterium that was isolated from adobe, garden soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bobili**
	Full Scientific Name (LPSN)	Streptomyces bobili (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces galilaeus
	Synonym	"Actinomyces* bobili"*

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9239]	growth	28 °C
[Ref.: #18475]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9239]	Temperature range	mesophilic
[Ref.: #18475]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9239]	Name of produced compound	cinerubin-like antibiotic
[Ref.: #9239]	Name of produced compound	restriction endonuclease SboI
[Ref.: #20216]	Name of produced compound	Cinerubin-like antibiotic

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18475]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18475]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18475]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18475]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18475]	mannitol ChEBI	-
[Ref.: #18475]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18475]	raffinose ChEBI	+
[Ref.: #18475]	rhamnose ChEBI	+
[Ref.: #18475]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18475]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18475]	59	+	-	+	-	-	-	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9239]	Sample type/isolated from	adobe, garden soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB249925 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	35
Soil Samples	664
Animal Samples	54
Plant Samples	49
Total Samples	802

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18475]	Biosafety level	1	German classification
[Ref.: #9239]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces bobili gene for 16S ribosomal RNA, partial sequence, strain: JCM 4627	D44274	120	ENA	67280 tax ID	*
[Ref.: #20218]	Streptomyces bobili gene for 16S rRNA, partial sequence, strain: NBRC 13199	AB184328	1475	ENA	67280 tax ID	*
[Ref.: #20218]	Streptomyces bobili gene for 16S rRNA, partial sequence, strain: NBRC 16166	AB249925	1451	ENA	67280 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces bobili NRRL B-1338	GCA_002154575	scaffold	GenBank	67280 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bobili NRRL B-1338 NCBI: GCA_002154575.1
[Ref.: #69480]	flagellated	no	97.578	no
[Ref.: #69480]	gram-positive	yes	89.43	no
[Ref.: #69480]	anaerobic	no	99.32	no
[Ref.: #69480]	halophile	no	95.752	no
[Ref.: #69480]	spore-forming	yes	93.982	no
[Ref.: #69480]	glucose-util	yes	88.449	no
[Ref.: #69480]	aerobic	yes	92.985	no
[Ref.: #69480]	thermophile	no	99.107	yes
[Ref.: #69480]	glucose-ferment	no	90.785	no
[Ref.: #69480]	motile	no	93.451	no

Availability in culture collections External links

[Ref.: #9239]

Culture collection no.

DSM 40056, ATCC 23889, ATCC 3310, CBS 675.68, IFO 13199, IMRU 3310, ISP 5056, NBRC 13199, RIA 1116, JCM 4012, BCRC 13671, CBS 419.34, CGMCC 4.1624, IFO 16166, IMET 41372, JCM 4627, NBRC 16166, NRRL B-1338, NRRL B-2097, VKM Ac-1756

[Ref.: #84160]

SI-ID 92661

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*

References

#9239

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40056

#18475

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84160

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92661.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces bobili NRRL B-1338

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