Name: Streptomyces bluensis DSM 40564
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15053

Type strain:

Species: Streptomyces bluensis

Culture col. no.: DSM 40564, ATCC 27420, CBS 761.72, IFO 13460, ISP 5564, NBRC 13460, NRRL 2876, RIA 1421, UC 12898, JCM 4729, BCRC 15180, CBS 239.69, CGMCC 4.1463, LMG 5969, NCIMB 9754

Strain history: KCC S-0729 <-- IFO 13460 <-- SAJ <-- ISP 5564 <-- NRRL 2876 <-- Upjohn Co., USA; UC 2478.

NCBI tax ID(s): 33897 (species)

SI-ID 5010

LMG 5969, ATCC 27420, DSM 40564, IFO 13460, JCM 4729, NCIB 9754, NRRL 2876, NCIMB 9754, CBS 761.72, CBS 239.69, AS 4.1463, NBRC 13460, BCRC 15180, CCRC 15180, CGMCC 4.1463

Section

Streptomyces bluensis DSM 40564 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bluensis**
	Full Scientific Name (LPSN)	Streptomyces bluensis Mason et al. 1963 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.594

[Ref.: #19476]	Colony color	Beige
[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 2

[Ref.: #19476]	Colony color	Beige
[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 5

[Ref.: #19476]	Colony color	Beige
[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 6

[Ref.: #19476]	Colony color	Beige
[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 7

[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 3

[Ref.: #19476]	Incubation period	10-14 days
[Ref.: #19476]	Cultivation medium used	ISP 4

[Ref.: #19476]	Multicellular complex forming ability	yes
[Ref.: #19476]	Multicellular complex name	Aerial Mycelium
[Ref.: #19476]	Multicellular complex color	Pastel blue (5024)
[Ref.: #19476]	Medium Name (multicellularity)	ISP 2

[Ref.: #19476]	Multicellular complex forming ability	yes
[Ref.: #19476]	Multicellular complex name	Aerial Mycelium
[Ref.: #19476]	Multicellular complex color	Pastel blue (5024)
[Ref.: #19476]	Medium Name (multicellularity)	ISP 3

[Ref.: #19476]	Multicellular complex forming ability	yes
[Ref.: #19476]	Multicellular complex name	Aerial Mycelium
[Ref.: #19476]	Multicellular complex color	Pastel blue (5024)
[Ref.: #19476]	Medium Name (multicellularity)	ISP 4

[Ref.: #19476]	Multicellular complex forming ability	no
[Ref.: #19476]	Medium Name (multicellularity)	ISP 5

[Ref.: #19476]	Multicellular complex forming ability	no
[Ref.: #19476]	Medium Name (multicellularity)	ISP 6

[Ref.: #19476]	Multicellular complex forming ability	no
[Ref.: #19476]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9646]	growth	28 °C
[Ref.: #19476]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9646]	Temperature range	mesophilic
[Ref.: #19476]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9646]	Name of produced compound	glebomycin
[Ref.: #20216]	Name of produced compound	glebomycin (bluensomycin
[Ref.: #19476]	Name of produced compound	Bluensomycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19476]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19476]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19476]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19476]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19476]	mannitol ChEBI	-
[Ref.: #19476]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19476]	raffinose ChEBI	-
[Ref.: #19476]	rhamnose ChEBI	-
[Ref.: #19476]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19476]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	bluensomycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19476]	336	+	+	+	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19476]	374	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9646]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19476]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces bluensis 16S rRNA gene, strain ISP5564	X79324	1520	ENA	33897 tax ID	*
[Ref.: #20218]	Streptomyces bluensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4729	D44316	121	ENA	33897 tax ID	*
[Ref.: #20218]	Streptomyces bluensis gene for 16S rRNA, partial sequence, strain: NBRC 13460	AB184421	1477	ENA	33897 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces bluensis JCM 4729	GCA_014650715	contig	GenBank	33897 tax ID	*
[Ref.: #66792]	Streptomyces bluensis strain JCM 4729	33897.3	wgs	PATRIC	33897 tax ID	*

[Ref.: #67770]

GC-content

70.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces bluensis strain JCM 4729 PATRIC: 33897.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bluensis strain JCM 4729 PATRIC: 33897.3
[Ref.: #69480]	gram-positive	yes	88.246	no
[Ref.: #69480]	anaerobic	no	99.3	no
[Ref.: #69480]	halophile	no	91.852	no
[Ref.: #69480]	spore-forming	yes	95.496	no
[Ref.: #69480]	glucose-util	yes	90.551	yes
[Ref.: #69480]	flagellated	no	97.942	no
[Ref.: #69480]	thermophile	no	96.813	yes
[Ref.: #69480]	aerobic	yes	93.936	no
[Ref.: #69480]	motile	no	95.082	no
[Ref.: #69480]	glucose-ferment	no	89.626	no

Availability in culture collections External links

[Ref.: #9646]

Culture collection no.

DSM 40564, ATCC 27420, CBS 761.72, IFO 13460, ISP 5564, NBRC 13460, NRRL 2876, RIA 1421, UC 12898, JCM 4729, BCRC 15180, CBS 239.69, CGMCC 4.1463, LMG 5969, NCIMB 9754

[Ref.: #84159]

SI-ID 5010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Isolation and characterization of bluensomycin biosynthetic genes from Streptomyces bluensis.	Jung YG, Kang SH, Hyun CG, Yang YY, Kang CM, Suh JW	FEMS Microbiol Lett	10.1016/S0378-1097(03)00019-3	2003	*

References

#9646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40564

#19476

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84159

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5010.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces bluensis strain JCM 4729

Streptomyces bluensis strain JCM 4729

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