Name: Streptomyces badius 1203/53
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15046

Type strain:

Species: Streptomyces badius

Strain Designation: 1203/53

Culture col. no.: DSM 40139, ATCC 19729, ATCC 19888, CBS 468.68, IFO 12745, ISP 5139, NBRC 12745, RIA 1010, JCM 4350, BCRC 13759, CGMCC 4.1406, HAMBI 1008, IMET 43089, INA 1203/53, LMG 19353, NBIMCC 3320, NCIMB 13011, NRRL B-2567, VKM Ac-735

Strain history: KCC S-0350 <-- IFO 12745 <-- SAJ <-- ISP 5139 <-- INA 1203/53.

NCBI tax ID(s): 1941 (species)

SI-ID 13357

LMG 19353, ATCC 19729, ATCC 19888, CCRC 13759, DSM 40139, IFO 12745, IMET 43089, JCM 4350, NRRL B-2567, VKM Ac-735, NCIMB 13011, CBS 468.68, CBS 105.60, AS 4.1406, KCTC 9845, NBRC 12745, BCRC 13759, HAMBI 1008, NBIMCC 3320, CGMCC 4.1406

Other strains from Streptomyces badius

S. badius ST033322(HKI),
S. badius SF006188(FSU),

Section

Streptomyces badius 1203/53 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces badius**
	Full Scientific Name (LPSN)	Streptomyces badius (Kudrina 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces badius"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.134

[Ref.: #19408]	Colony color	Brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 2

[Ref.: #19408]	Colony color	Dark brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 3

[Ref.: #19408]	Colony color	Brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 4

[Ref.: #19408]	Colony color	Brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 5

[Ref.: #19408]	Colony color	Brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 6

[Ref.: #19408]	Colony color	Brown
[Ref.: #19408]	Incubation period	10-14 days
[Ref.: #19408]	Cultivation medium used	ISP 7

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Grey
[Ref.: #19408]	Medium Name (multicellularity)	ISP 2

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Grey/Yellow
[Ref.: #19408]	Medium Name (multicellularity)	ISP 3

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Grey/Yellow
[Ref.: #19408]	Medium Name (multicellularity)	ISP 4

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Yellow
[Ref.: #19408]	Medium Name (multicellularity)	ISP 5

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Yellow/Grey
[Ref.: #19408]	Medium Name (multicellularity)	ISP 6

[Ref.: #19408]	Multicellular complex forming ability	yes
[Ref.: #19408]	Multicellular complex name	Aerial Mycelium
[Ref.: #19408]	Multicellular complex color	Grey
[Ref.: #19408]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9341]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9341]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9341]	growth	28 °C
[Ref.: #19408]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9341]	Temperature range	mesophilic
[Ref.: #19408]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19408]	Spore description	Formation of spore chains: rectifilibrilis, spore surface: smooth
[Ref.: #19408]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %91
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9341]	Name of produced compound	cutinase
[Ref.: #20216]	Name of produced compound	Antibiotic agent
[Ref.: #20216]	Name of produced compound	Antifungal agent

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19408]		NaCl		maximum	5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19408]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19408]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19408]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19408]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19408]	mannitol ChEBI	-
[Ref.: #19408]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19408]	raffinose ChEBI	-
[Ref.: #19408]	rhamnose ChEBI	-
[Ref.: #19408]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19408]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19408]	273	+	+	-	-	+	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9341]	Sample type/isolated from	soil
[Ref.: #9341]	Geographic location (country and/or sea, region)	Kaukasus
[Ref.: #9341]	Country	Russia
[Ref.: #9341]	Country ISO 3 Code	RUS
[Ref.: #9341]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999783 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9341]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19408]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces badius gene for 16S ribosomal RNA, partial sequence, strain: JCM 4350	D44068	120	ENA	1941 tax ID	*
[Ref.: #20218]	Streptomyces badius gene for 16S rRNA, partial sequence, strain: NBRC 12745	AB184114	1474	ENA	1941 tax ID	*
[Ref.: #20218]	Streptomyces badius strain NRRL B-2567 16S ribosomal RNA gene, partial sequence	AY999783	1496	ENA	1941 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces badius JCM 4350	GCA_014649415	scaffold	GenBank	1941 tax ID	*
[Ref.: #66792]	Streptomyces badius strain JCM 4350	1941.9	wgs	PATRIC	1941 tax ID	*

[Ref.: #67770]

GC-content

70 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces badius JCM 4350 NCBI: GCA_014649415.1
[Ref.: #69481]	spore-forming	yes	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces badius JCM 4350 NCBI: GCA_014649415.1
[Ref.: #69480]	flagellated	no	98.073	no
[Ref.: #69480]	gram-positive	yes	91.021	no
[Ref.: #69480]	anaerobic	no	99.277	no
[Ref.: #69480]	aerobic	yes	95.055	no
[Ref.: #69480]	halophile	no	91.439	no
[Ref.: #69480]	spore-forming	yes	93.842	no
[Ref.: #69480]	glucose-util	yes	88.083	yes
[Ref.: #69480]	thermophile	no	99.115	no
[Ref.: #69480]	motile	no	93.911	no
[Ref.: #69480]	glucose-ferment	no	86.292	no

Availability in culture collections External links

[Ref.: #9341]

Culture collection no.

DSM 40139, ATCC 19729, ATCC 19888, CBS 468.68, IFO 12745, ISP 5139, NBRC 12745, RIA 1010, JCM 4350, BCRC 13759, CGMCC 4.1406, HAMBI 1008, IMET 43089, INA 1203/53, LMG 19353, NBIMCC 3320, NCIMB 13011, NRRL B-2567, VKM Ac-735

[Ref.: #84152]

SI-ID 13357

References

#9341

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40139

#19408

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84152

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13357.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces badius JCM 4350

Streptomyces badius JCM 4350

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