Streptomyces aureoverticillatus (DSM 40080, ATCC 15854, CBS 465.68)

Name: Streptomyces aureoverticillatus (DSM 40080, ATCC 15854, CBS 465.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15036

Type strain

Strain Designation INMI-1077

Culture col. no. DSM 40080 ATCC 15854 CBS 465.68 IFO 12742 INMI-1077 11 more

NCBI tax ID(s) 66871

Special Collections DSMZ JCM Wink compendium

History DSMZ <- E.B. Shirling, ISP <- V.D. Kuznetsov, RIA <- INMI JCM <-- KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007.

Links

Streptomyces aureoverticillatus INMI-1077 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36529

ATCC 15854,ATCC 19726,IFO 12742,DSM 40080,JCM 4347,CCRC 12185,NRRL B-3326,VKM Ac-48,CBS 465.68,AS 4.1666,NBRC 12742,BCRC 12185,CBS 465.58,CGMCC 4.1666

@ref 20215

Last LPSN update 2026-05-29 08:28:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces aureoverticillatus

Full scientific name Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970 (Approved Lists 1980)

Synonyms (1)

"Actinomyces aureoverticillatus"

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90
125438	92.811	positive
125439	99.33	positive
125439	93.928

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9293	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9293	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
9293	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9293	positive	growth	28
18525	positive	optimum	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.893

Spore formation

@ref	Spore formation	Confidence
125438		94.334

Compound production

9293

Compoundaminoacylase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18525	NaCl	positive	growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18525	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18525	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18525	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18525	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18525	29864 ChEBI	mannitol	+
18525	17268 ChEBI	myo-inositol	+/-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18525	16634 ChEBI	raffinose	-
18525	26546 ChEBI	rhamnose	-
18525	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18525	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18525	+	-	-	-	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code
9293	soil
67770	Soil	Russia	RUS

Taxonmaps

69479

Global distribution of 16S sequence AY999774 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	13
Soil Samples	108
Animal Samples	11
Plant Samples	7
Total Samples	139

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9293	1	Risk group (German classification) According to TRBA 466
18525	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464939v1 assembly for Streptomyces aureoverticillatus JCM 4347	contig	GCA_014649395	66871.6	2989938083	66871	14.88

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces aureoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4347	D44066	121	66871
20218	Streptomyces aureoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 12742	AB249919	1453	66871
9293	Streptomyces aureoverticillatus strain NRRL B-3326 16S ribosomal RNA gene, partial sequence	AY999774	1496	66871
124043	Streptomyces aureoverticillatus strain JCM 4347 16S ribosomal RNA gene, partial sequence.	MT760516	1351	66871

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464939v1 assembly for Streptomyces aureoverticillatus JCM 4347
BV-BRC: 66871.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.89	no
125439	motility	BacteriaNetⓘ	no	93.93	no
125439	gram_stain	BacteriaNetⓘ	positive	99.33	no
125439	spore_formation	BacteriaNetⓘ	yes	86.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces aureoverticillatus strain JCM 4347
PATRIC: 66871.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.81	no
125438	anaerobic	anaerobicⓘ	no	96.36	no
125438	spore-forming	spore-formingⓘ	yes	94.33	no
125438	aerobic	aerobicⓘ	yes	88.24	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Aureoverticillactam, a Potent Antifungal Macrocyclic Lactam from Streptomyces aureoverticillatus HN6, Generates Calcium Dyshomeostasis-Induced Cell Apoptosis via the Phospholipase C Pathway in Fusarium oxysporum f. sp. cubense Race 4.	Wang LY, Zhang YF, Yang DY, Zhang SJ, Han DD, Luo YP.	Phytopathology	10.1094/phyto-12-20-0543-r	2021
	Identification of the lydiamycin biosynthetic gene cluster in a plant pathogen guides structural revision and identification of molecular target.	Ford JJ, Santos-Aberturas J, Hems ES, Sallmen JW, Bogeholz LAK, Polturak G, Osbourn A, Wright JA, Rodnina MV, Vereecke D, Francis IM, Truman AW.	Proc Natl Acad Sci U S A	10.1073/pnas.2424388122	2025
Enzymology	Aureoverticillactam, a novel 22-atom macrocyclic lactam from the marine actinomycete Streptomyces aureoverticillatus.	Mitchell SS, Nicholson B, Teisan S, Lam KS, Potts BC.	J Nat Prod	10.1021/np049970g	2004
Genetics	Harnessing the Microbiomes of Suppressive Composts for Plant Protection: From Metagenomes to Beneficial Microorganisms and Reliable Diagnostics.	Lutz S, Thuerig B, Oberhaensli T, Mayerhofer J, Fuchs JG, Widmer F, Freimoser FM, Ahrens CH.	Front Microbiol	10.3389/fmicb.2020.01810	2020
Phylogeny	Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.).	Peng C, Zhuang X, Gao C, Wang Z, Zhao J, Huang SX, Liu C, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01561-3	2021
Phylogeny	Characterization of Streptomyces sporangiiformans sp. nov., a Novel Soil Actinomycete with Antibacterial Activity against Ralstonia solanacearum.	Zhao J, Han L, Yu M, Cao P, Li D, Guo X, Liu Y, Wang X, Xiang W	Microorganisms	10.3390/microorganisms7090360	2019
Phylogeny	Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).	Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0021-3	2013

References

#9293	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40080
#18525	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces aureoverticillatus (DSM 40080, ATCC 15854, CBS 465.68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014649395

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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