Name: Streptomyces aureoverticillatus INMI-1077
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15036

Type strain:

Species: Streptomyces aureoverticillatus

Strain Designation: INMI-1077

Culture col. no.: DSM 40080, ATCC 15854, CBS 465.68, IFO 12742, ISP 5080, NBRC 12742, RIA 1007, RIA 679, JCM 4347, ATCC 19726, BCRC 12185, CGMCC 4.1666, INMI 1007, NRRL B-3326, VKM Ac-48

Strain history: KCC S-0347 <-- IFO 12742 <-- SAJ <-- ISP 5080 <-- RIA 679 <-- INMI 1007.

NCBI tax ID(s): 66871 (species)

SI-ID 36529

ATCC 15854, ATCC 19726, IFO 12742, DSM 40080, JCM 4347, CCRC 12185, NRRL B-3326, VKM Ac-48, CBS 465.68, AS 4.1666, NBRC 12742, BCRC 12185, CBS 465.58, CGMCC 4.1666

Special Collections

Section

Streptomyces aureoverticillatus INMI-1077 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces aureoverticillatus**
	Full Scientific Name (LPSN)	Streptomyces aureoverticillatus (Krassilnikov and Yuan 1960) Pridham 1970 (Approved Lists 1980)

Synonym

"Actinomyces aureoverticillatus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.811

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9293]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9293]

Culture medium growth

[Ref.: #9293]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9293]

Culture medium composition

expand / minimize

[Ref.: #9293]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #9293]

Culture medium growth

[Ref.: #9293]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9293]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9293]

Culture medium growth

[Ref.: #9293]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9293]	growth	28 °C
[Ref.: #18525]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %94.334
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9293]

Name of produced compound

aminoacylase

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18525]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18525]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18525]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18525]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18525]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18525]	mannitol ChEBI	+
[Ref.: #18525]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18525]	raffinose ChEBI	-
[Ref.: #18525]	rhamnose ChEBI	-
[Ref.: #18525]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18525]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18525]	85	+	-	-	-	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9293]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999774 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	13
Soil Samples	108
Animal Samples	11
Plant Samples	7
Total Samples	139

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18525]	Biosafety level	1	German classification
[Ref.: #9293]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9293]	Streptomyces aureoverticillatus strain NRRL B-3326 16S ribosomal RNA gene, partial sequence	AY999774	1496	GenBank ENA	66871 tax ID
[Ref.: #20218]	Streptomyces aureoverticillatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4347	D44066	121	GenBank ENA	66871 tax ID	*
[Ref.: #20218]	Streptomyces aureoverticillatus gene for 16S rRNA, partial sequence, strain: NBRC 12742	AB249919	1453	GenBank ENA	66871 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces aureoverticillatus JCM 4347	GCA_014649395	contig	GenBank ENA	66871 tax ID	*
[Ref.: #66792]	Streptomyces aureoverticillatus strain JCM 4347	66871.6	wgs	PATRIC	66871 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces aureoverticillatus strain JCM 4347 PATRIC: 66871.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces aureoverticillatus strain JCM 4347 PATRIC: 66871.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.811	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.358	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	94.334	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.244	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #9293]

Culture collection no.

DSM 40080, ATCC 15854, CBS 465.68, IFO 12742, ISP 5080, NBRC 12742, RIA 1007, RIA 679, JCM 4347, ATCC 19726, BCRC 12185, CGMCC 4.1666, INMI 1007, NRRL B-3326, VKM Ac-48

[Ref.: #84142]

SI-ID 36529

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.).	Peng C, Zhuang X, Gao C, Wang Z, Zhao J, Huang SX, Liu C, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01561-3	2021	*
Phylogeny	Characterization of Streptomyces sporangiiformans sp. nov., a Novel Soil Actinomycete with Antibacterial Activity against Ralstonia solanacearum.	Zhao J, Han L, Yu M, Cao P, Li D, Guo X, Liu Y, Wang X, Xiang W	Microorganisms	10.3390/microorganisms7090360	2019	*
Phylogeny	Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).	Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0021-3	2013	*

References

#9293

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40080

#18525

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84142

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36529.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces aureoverticillatus strain JCM 4347

Streptomyces aureoverticillatus strain JCM 4347

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