Clostridium septicum (CCUG 39580)
BacDive ID
150301
Type strain
Culture col. no.
CCUG 39580
NCBI tax ID(s)
1504
Special Collections
CCUG
Links
Clostridium septicum CCUG 39580 is a bacterium that was isolated from Bovine necrotic muscle tissue,deceased animal.
BacteriaName and taxonomic classification
| @ref 20215 |
|
Last LPSN update
2026-05-29 08:42:06 |
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Clostridiaceae |
| Genus Clostridium |
| Species Clostridium septicum |
| Full scientific name Clostridium septicum (Macé 1889) Ford 1927 (Approved Lists 1980) |
| Synonyms (1) |
Physiology and metabolism
Metabolite utilization
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
Metabolite production
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | from API rID32A |
Metabolite tests
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
Enzymes
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | + | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
Pathway annotation
Computationally determined by 
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | C4 and CAM-carbon fixation | 100 | 8 of 8 |  |
|
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | gluconeogenesis | 100 | 8 of 8 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | |
|
| 66794 | starch degradation | 90 | 9 of 10 | |
|
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 87.5 | 7 of 8 | |
|
| 66794 | pyrimidine metabolism | 86.67 | 39 of 45 | |
|
| 66794 | propanol degradation | 85.71 | 6 of 7 | |
|
| 66794 | purine metabolism | 80.85 | 76 of 94 | |
|
| 66794 | cellulose degradation | 80 | 4 of 5 | |
|
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | |
|
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | |
|
| 66794 | glycogen metabolism | 80 | 4 of 5 | |
|
| 66794 | vitamin B12 metabolism | 79.41 | 27 of 34 | |
|
| 66794 | NAD metabolism | 77.78 | 14 of 18 | |
|
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | |
|
| 66794 | nitrate assimilation | 77.78 | 7 of 9 | |
|
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | |
|
| 66794 | glycolysis | 76.47 | 13 of 17 | |
|
| 66794 | alanine metabolism | 75.86 | 22 of 29 | |
|
| 66794 | biotin biosynthesis | 75 | 3 of 4 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | |
|
| 66794 | acetate fermentation | 75 | 3 of 4 | |
|
| 66794 | butanoate fermentation | 75 | 3 of 4 | |
|
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | |
|
| 66794 | heme metabolism | 71.43 | 10 of 14 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | |
|
| 66794 | photosynthesis | 71.43 | 10 of 14 | |
|
| 66794 | citric acid cycle | 71.43 | 10 of 14 | |
|
| 66794 | myo-inositol biosynthesis | 70 | 7 of 10 | |
|
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | |
|
| 66794 | octane oxidation | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | molybdenum cofactor biosynthesis | 66.67 | 6 of 9 | |
|
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | |
|
| 66794 | serine metabolism | 66.67 | 6 of 9 | |
|
| 66794 | glutathione metabolism | 64.29 | 9 of 14 | |
|
| 66794 | oxidative phosphorylation | 60.44 | 55 of 91 | |
|
| 66794 | hydrogen production | 60 | 3 of 5 | |
|
| 66794 | propionate fermentation | 60 | 6 of 10 | |
|
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | |
|
| 66794 | threonine metabolism | 60 | 6 of 10 | |
|
| 66794 | phenylacetate degradation (aerobic) | 60 | 3 of 5 | |
|
| 66794 | non-pathway related | 57.89 | 22 of 38 | |
|
| 66794 | glutamate and glutamine metabolism | 57.14 | 16 of 28 | |
|
| 66794 | lipid metabolism | 51.61 | 16 of 31 | |
|
| 66794 | tetrahydrofolate metabolism | 50 | 7 of 14 | |
|
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | |
|
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | |
|
| 66794 | ethanol fermentation | 50 | 1 of 2 | |
|
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | |
|
| 66794 | Entner Doudoroff pathway | 50 | 5 of 10 | |
|
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | |
|
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | |
|
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | |
|
| 66794 | glycine metabolism | 50 | 5 of 10 | |
|
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | |
|
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | |
|
| 66794 | methionine metabolism | 46.15 | 12 of 26 | |
|
| 66794 | proline metabolism | 45.45 | 5 of 11 | |
|
| 66794 | lysine metabolism | 45.24 | 19 of 42 | |
|
| 66794 | tryptophan metabolism | 44.74 | 17 of 38 | |
|
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | |
|
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | |
|
| 66794 | creatinine degradation | 40 | 2 of 5 | |
|
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | |
|
| 66794 | cysteine metabolism | 38.89 | 7 of 18 | |
|
| 66794 | sulfate reduction | 38.46 | 5 of 13 | |
|
| 66794 | urea cycle | 38.46 | 5 of 13 | |
|
| 66794 | histidine metabolism | 37.93 | 11 of 29 | |
|
| 66794 | isoleucine metabolism | 37.5 | 3 of 8 | |
|
| 66794 | arginine metabolism | 37.5 | 9 of 24 | |
|
| 66794 | ketogluconate metabolism | 37.5 | 3 of 8 | |
|
| 66794 | metabolism of disaccharids | 36.36 | 4 of 11 | |
|
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | |
|
| 66794 | pentose phosphate pathway | 36.36 | 4 of 11 | |
|
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | |
|
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | |
|
| 66794 | cyanate degradation | 33.33 | 1 of 3 | |
|
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | |
|
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | |
|
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | |
|
| 66794 | valine metabolism | 33.33 | 3 of 9 | |
|
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | |
|
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | |
|
| 66794 | phenylpropanoid biosynthesis | 30.77 | 4 of 13 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | |
|
| 66794 | polyamine pathway | 30.43 | 7 of 23 | |
|
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 30 | 3 of 10 | |
|
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | |
|
| 66794 | degradation of sugar acids | 28 | 7 of 25 | |
|
| 66794 | arachidonic acid metabolism | 27.78 | 5 of 18 | |
|
| 66794 | ascorbate metabolism | 27.27 | 6 of 22 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | lactate fermentation | 25 | 1 of 4 | |
|
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | |
|
| 66794 | degradation of sugar alcohols | 25 | 4 of 16 | |
|
| 66794 | toluene degradation | 25 | 1 of 4 | |
|
| 66794 | carnitine metabolism | 25 | 2 of 8 | |
|
| 66794 | leucine metabolism | 23.08 | 3 of 13 | |
|
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | |
Fatty acid profile
Metadata FA analysis  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 54842 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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API rID32A
Literature
Literature 
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Identification of clinically important anaerobic bacteria by an oligonucleotide array. | Lin YT, Vaneechoutte M, Huang AH, Teng LJ, Chen HM, Su SL, Chang TC. | J Clin Microbiol | 10.1128/jcm.01620-09 | 2010 | |
How to cite
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive150301.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain dataIsabel Schober, Julia Koblitz, Joaquim Sardà Carbasse, Christian Ebeling, Marvin Leon Schmidt, Adam Podstawka, Rohit Gupta, Vinodh Ilangovan, Javad Chamanara, Jörg Overmann, Lorenz Christian Reimer
Nucleic Acids Research; database issue 2025.
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