Name: Streptomyces aurantiogriseus DSM 40138
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15012

Type strain:

Species: Streptomyces aurantiogriseus

Culture col. no.: DSM 40138, ATCC 19887, CBS 663.68, ETH 27525, IFO 12842, INA 10369/58, ISP 5138, NBRC 12842, RIA 1130, JCM 4346, ATCC 23883, BCRC 13758, CGMCC 4.1450, LMG 19298, NCIMB 9849, NRRL B-5416, VKM Ac-1093

Strain history: KCC S-0346 <-- IFO 12842 <-- SAJ <-- ISP 5138 <-- INA 10369/58.

NCBI tax ID(s): 66870 (species)

SI-ID 13324

LMG 19298, ATCC 19887, ATCC 23883, CCRC 13758, DSM 40138, IFO 12842, JCM 4346, NCIMB 9849, NRRL B-5416, VKM Ac-1093, CBS 663.68, AS 4.1450, NBRC 12842, BCRC 13758, NCIB 9849, CGMCC 4.1450

Other strains from Streptomyces aurantiogriseus

S. aurantiogriseus DSM 41171, IMRU 3839

Section

Streptomyces aurantiogriseus DSM 40138 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces aurantiogriseus**
	Full Scientific Name (LPSN)	Streptomyces aurantiogriseus (Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces aurantiogriseus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.007

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 2

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 3

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 4

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 5

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 6

[Ref.: #19407]	Colony color	Brown
[Ref.: #19407]	Incubation period	10-14 days
[Ref.: #19407]	Cultivation medium used	ISP 7

[Ref.: #19407]	Multicellular complex forming ability	yes
[Ref.: #19407]	Multicellular complex name	Aerial Mycelium
[Ref.: #19407]	Multicellular complex color	White
[Ref.: #19407]	Medium Name (multicellularity)	ISP 2

[Ref.: #19407]	Multicellular complex forming ability	yes
[Ref.: #19407]	Multicellular complex name	Aerial Mycelium
[Ref.: #19407]	Multicellular complex color	Grey
[Ref.: #19407]	Medium Name (multicellularity)	ISP 3

[Ref.: #19407]	Multicellular complex forming ability	yes
[Ref.: #19407]	Multicellular complex name	Aerial Mycelium
[Ref.: #19407]	Multicellular complex color	Grey
[Ref.: #19407]	Medium Name (multicellularity)	ISP 4

[Ref.: #19407]	Multicellular complex forming ability	yes
[Ref.: #19407]	Multicellular complex name	Aerial Mycelium
[Ref.: #19407]	Multicellular complex color	Grey
[Ref.: #19407]	Medium Name (multicellularity)	ISP 5

[Ref.: #19407]	Multicellular complex forming ability	no
[Ref.: #19407]	Medium Name (multicellularity)	ISP 6

[Ref.: #19407]	Multicellular complex forming ability	yes
[Ref.: #19407]	Multicellular complex name	Aerial Mycelium
[Ref.: #19407]	Multicellular complex color	Grey
[Ref.: #19407]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #9340]	growth	28 °C
[Ref.: #19407]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9340]	Temperature range	mesophilic
[Ref.: #19407]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19407]	Spore description	Formation of spore chains: retinaculiapetri, spore surface: smooth to warty
[Ref.: #19407]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19407]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19407]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19407]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19407]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19407]	mannitol ChEBI	+
[Ref.: #19407]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19407]	raffinose ChEBI	+
[Ref.: #19407]	rhamnose ChEBI	+
[Ref.: #19407]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19407]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19407]	272	+	+	-	-	-	-	+	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9340]	Sample type/isolated from	soil
[Ref.: #9340]	Country	USSR
[Ref.: #9340]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999773 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	991
Soil Samples	2201
Animal Samples	1970
Plant Samples	240
Total Samples	5402

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9340]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19407]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces aurantiogriseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4346	D44065	120	ENA	66870 tax ID	*
[Ref.: #20218]	Streptomyces aurantiogriseus gene for 16S rRNA, partial sequence, strain: NBRC 12842	AB184188	1480	ENA	66870 tax ID	*
[Ref.: #20218]	Streptomyces aurantiogriseus strain NRRL B-5416 16S ribosomal RNA gene, partial sequence	AY999773	1495	ENA	66870 tax ID	*
[Ref.: #20218]	Streptomyces aurantiogriseus strain NRRL B-5416 16S ribosomal RNA gene, partial sequence	AY999793	1493	ENA	66870 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces aurantiogriseus JCM 4346	GCA_014649375	scaffold	GenBank	66870 tax ID
[Ref.: #66792]	Streptomyces aurantiogriseus strain JCM 4346	66870.3	wgs	PATRIC	66870 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces aurantiogriseus JCM 4346 NCBI: GCA_014649375.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces aurantiogriseus strain JCM 4346 PATRIC: 66870.3
[Ref.: #69480]	gram-positive	yes	85.499	no
[Ref.: #69480]	anaerobic	no	98.977	no
[Ref.: #69480]	halophile	no	94.475	no
[Ref.: #69480]	spore-forming	yes	91.788	yes
[Ref.: #69480]	glucose-util	yes	90.112	no
[Ref.: #69480]	thermophile	no	98.026	no
[Ref.: #69480]	flagellated	no	97.779	no
[Ref.: #69480]	motile	no	93.793	no
[Ref.: #69480]	aerobic	yes	92.252	no
[Ref.: #69480]	glucose-ferment	no	88.437	no

Availability in culture collections External links

[Ref.: #9340]

Culture collection no.

DSM 40138, ATCC 19887, CBS 663.68, ETH 27525, IFO 12842, INA 10369/58, ISP 5138, NBRC 12842, RIA 1130, JCM 4346, ATCC 23883, BCRC 13758, CGMCC 4.1450, LMG 19298, NCIMB 9849, NRRL B-5416, VKM Ac-1093

[Ref.: #84119]

SI-ID 13324

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium.	Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002995	2018	*
Phylogeny	Streptomyces tremellae sp. nov., isolated from a culture of the mushroom Tremella fuciformis.	Wen ZQ, Chen B, Li X, Li BB, Li CH, Huang QH, Zhang QH, Dai WH, Jiang YJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001464	2016	*
Phylogeny	Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.	Lin YB, Wang XY, Li HF, Wang NN, Wang HX, Tang M, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.024018-0	2010	*
Phylogeny	Streptomyces alni sp. nov., a daidzein-producing endophyte isolated from a root of Alnus nepalensis D. Don.	Liu N, Wang H, Liu M, Gu Q, Zheng W, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65769-0	2009	*

References

#9340

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40138

#19407

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84119

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13324.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces aurantiogriseus JCM 4346

Streptomyces aurantiogriseus strain JCM 4346

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