Name: Streptomyces aurantiacus DSM 40412
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15008

Type strain:

Species: Streptomyces aurantiacus

Culture col. no.: DSM 40412, ATCC 19822, ATCC 25429, CBS 927.69, IFO 13017, INMI 1373, ISP 5412, NBRC 13017, RIA 1209, JCM 4453, BCRC 16233, CGMCC 4.1429, LMG 19358, NRRL ISP-5412, VKM Ac-44

Strain history: KCC S-0453 <-- IFO 13017 <-- SAJ <-- ISP 5412 <-- INMI 1373.

NCBI tax ID(s): 47760 (species)

SI-ID 13361

LMG 19358, ATCC 19822, ATCC 25429, DSM 40412, IFO 13017, JCM 4453, VKM Ac-44, CBS 927.69, AS 4.1429, NBRC 13017, NRRL ISP-5412, BCRC 16233, CCRC 16233, CGMCC 4.1429

Other strains from Streptomyces aurantiacus

Section

Streptomyces aurantiacus DSM 40412 is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces aurantiacus**
	Full Scientific Name (LPSN)	Streptomyces aurantiacus (Rossi Doria 1891) Waksman 1953 (Approved Lists 1980)

	Synonym	"Actinomyces* albosporeus"*
	Synonym	"Actinomyces* glomeroaurantiacus"*
	Synonym	Streptomyces glomeroaurantiacus
	Synonym	"Streptotrix* aurantiaca"*
	Synonym	Streptomyces albosporeus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9524]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9524]

Culture medium growth

[Ref.: #9524]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9524]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9524]	growth	28 °C
[Ref.: #18589]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9524]	Temperature range	mesophilic
[Ref.: #18589]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18589]	146	-	-	-	-	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AJ781383 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	4
Soil Samples	37
Animal Samples	4
Plant Samples	106
Total Samples	151

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18589]	Biosafety level	1	German classification
[Ref.: #9524]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces aurantiacus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4453	D44150	120	ENA	47760 tax ID	*
[Ref.: #20218]	Streptomyces aurantiacus 16S rRNA gene, type strain LMG 19358	AJ781383	1482	ENA	47760 tax ID	*
[Ref.: #20218]	Streptomyces aurantiacus gene for 16S rRNA, partial sequence, strain: NBRC 13017	AB184259	1473	ENA	47760 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces aurantiacus NRRL ISP-5412	GCA_001418335	scaffold	GenBank	47760 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces aurantiacus NRRL ISP-5412 NCBI: GCA_001418335.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces aurantiacus NRRL ISP-5412 NCBI: GCA_001418335.1
[Ref.: #69480]	flagellated	no	97.458	no
[Ref.: #69480]	gram-positive	yes	89.429	no
[Ref.: #69480]	anaerobic	no	99.377	no
[Ref.: #69480]	aerobic	yes	95.017	no
[Ref.: #69480]	halophile	no	91.992	no
[Ref.: #69480]	spore-forming	yes	95.116	no
[Ref.: #69480]	glucose-util	yes	88.172	no
[Ref.: #69480]	thermophile	no	98.115	yes
[Ref.: #69480]	motile	no	93.186	no
[Ref.: #69480]	glucose-ferment	no	89.194	no

Availability in culture collections External links

[Ref.: #9524]

Culture collection no.

DSM 40412, ATCC 19822, ATCC 25429, CBS 927.69, IFO 13017, INMI 1373, ISP 5412, NBRC 13017, RIA 1209, JCM 4453, BCRC 16233, CGMCC 4.1429, LMG 19358, NRRL ISP-5412, VKM Ac-44

[Ref.: #84116]

SI-ID 13361

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.	Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-3-823	2002	*
Phylogeny	Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium.	Li K, Man Y, Liu J, Liu Z, Ma H, Zhu H, Zhou Y, Zhang C, Zhou X	Int J Syst Evol Microbiol	10.1099/ijsem.0.005340	2022	*
Phylogeny	Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.	Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W	Arch Microbiol	10.1007/s00203-017-1353-6	2017	*

References

#9524

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40412

#18589

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84116

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13361.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces aurantiacus NRRL ISP-5412

Streptomyces aurantiacus NRRL ISP-5412

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