Name: Streptomyces atroolivaceus DSM 40137
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15005

Type strain:

Species: Streptomyces atroolivaceus

Culture col. no.: DSM 40137, ATCC 19725, CBS 464.68, IFO 12741, INA 4776/54, ISP 5137, NBRC 12741, RIA 1006, CCUG 11112, CIP 108257, JCM 4345, BCRC 12073, CECT 3316, CGMCC 4.1405, IMET 43088, INA 4776, LMG 19306, NRRL ISP-5137, VKM Ac-970, VTT E-052933, CBS 464-68, IPV 1612

Strain history: CIP <- 2004, CCUG <- 1981, M. Ridell, Göteborg Univ., Göteborg, Sweden <- S.T. Williams

NCBI tax ID(s): 66869 (species)

SI-ID 13329

LMG 19306, ATCC 19725, CCRC 12073, CCUG 11112, DSM 40137, IFO 12741, IMET 43088, JCM 4345, VKM Ac-970, CBS 464.68, AS 4.1405, CECT 3316, KCTC 9017, NBRC 12741, NRRL ISP-5137, BCRC 12073, CIP 108257, CGMCC 4.1405, VTT E-052933

Other strains from Streptomyces atroolivaceus

S. atroolivaceus DSM 40211, ATCC 15882, ATCC 23944, ...
S. atroolivaceus DSM 46459, IMET 41324
S. atroolivaceus STI10636(IMET), NCTC 7238
S. atroolivaceus BCRU MITI 12, DSM 42161

Section

Streptomyces atroolivaceus DSM 40137 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces atroolivaceus**
	Full Scientific Name (LPSN)	Streptomyces atroolivaceus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)

	Synonym	"Actinomyces* atroolivaceus"*
	Synonym	"Actinomyces* olivoviridis"*
	Synonym	Streptomyces olivoviridis

Information on morphological and physiological properties Morphology

[Ref.: #116541]	Gram stain	positive

[Ref.: #116541]	Cell shape	rod-shaped

[Ref.: #116541]	Motility	no

[Ref.: #116541]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9339]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9339]

Culture medium growth

[Ref.: #9339]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9339]

Culture medium composition

expand / minimize

[Ref.: #36711]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #36711]

Culture medium growth

[Ref.: #36711]

Culture medium composition

expand / minimize

[Ref.: #116541]

Culture medium

CIP Medium 57

[Ref.: #116541]

Culture medium growth

[Ref.: #116541]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9339]		growth	28 °C
[Ref.: #18542]		optimum	28 °C
[Ref.: #36711]		growth	25 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116541]		growth	10-37 °C
[Ref.: #116541]	no	growth	41 °C
[Ref.: #116541]	no	growth	45 °C

[Ref.: #9339]	Temperature range	mesophilic
[Ref.: #18542]	Temperature range	mesophilic
[Ref.: #36711]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116541]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116541]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #116541]	NaCl		growth	0-6	%
[Ref.: #116541]	NaCl	no	growth	8	%
[Ref.: #116541]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18542]	arabinose ChEBI	+/-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18542]	cellulose ChEBI	-
[Ref.: #116541]	citrate ChEBI	-	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #116541]	esculin ChEBI	+	hydrolysis
[Ref.: #18542]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18542]	glucose ChEBI	+
[Ref.: #116541]	hippurate ChEBI	+	hydrolysis
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18542]	mannitol ChEBI	-
[Ref.: #18542]	myo-inositol ChEBI	-
[Ref.: #116541]	nitrate ChEBI	-	reduction
[Ref.: #116541]	nitrate ChEBI	-	respiration
[Ref.: #116541]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18542]	raffinose ChEBI	-
[Ref.: #18542]	rhamnose ChEBI	+
[Ref.: #18542]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18542]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116541]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #116541]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #116541]	acetoin ChEBI	-
[Ref.: #116541]	glucose ChEBI		-
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68368]	indole ChEBI			-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116541]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116541]	amylase	+
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #116541]	beta-galactosidase	+	3.2.1.23
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116541]	caseinase	-	3.4.21.50
[Ref.: #116541]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #116541]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116541]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116541]	gelatinase	+/-
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #116541]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116541]	lipase	-
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #116541]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116541]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #116541]	oxidase	-
[Ref.: #116541]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116541]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #116541]	tween esterase	+
[Ref.: #116541]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18542]	102	+	+	+	+	+	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116541]	2674	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	+	+	-	-	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	-	-	-	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116541]	11031	-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9339]	Sample type/isolated from	soil
[Ref.: #9339]	Country	USSR
[Ref.: #9339]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ781320 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18542]	Biosafety level	1	German classification
[Ref.: #9339]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116541]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces atroolivaceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4345	D44064	120	ENA	66869 tax ID	*
[Ref.: #20218]	Streptomyces atroolivaceus strain KCTC 9017 16S ribosomal RNA gene, partial sequence	AY999832	1420	ENA	66869 tax ID	*
[Ref.: #20218]	Streptomyces atroolivaceus 16S rRNA gene, type strain LMG 19306	AJ781320	1478	ENA	66869 tax ID	*
[Ref.: #20218]	Streptomyces atroolivaceus gene for 16S rRNA, partial sequence, strain: NBRC 12741	AB184113	1473	ENA	66869 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces atroolivaceus NRRL ISP-5137	GCA_000717025	contig	GenBank	66869 tax ID

[Ref.: #67770]

GC-content

70.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces atroolivaceus NRRL ISP-5137 NCBI: GCA_000717025.1
[Ref.: #69480]	motile	no	94.939	no
[Ref.: #69480]	flagellated	no	97.792	no
[Ref.: #69480]	gram-positive	yes	89.416	no
[Ref.: #69480]	anaerobic	no	99.221	no
[Ref.: #69480]	halophile	no	92.199	no
[Ref.: #69480]	spore-forming	yes	96.057	no
[Ref.: #69480]	thermophile	no	99.084	yes
[Ref.: #69480]	glucose-util	yes	88.198	yes
[Ref.: #69480]	aerobic	yes	94.215	no
[Ref.: #69480]	glucose-ferment	no	87.086	no

Availability in culture collections External links

[Ref.: #9339]

Culture collection no.

DSM 40137, ATCC 19725, CBS 464.68, IFO 12741, INA 4776/54, ISP 5137, NBRC 12741, RIA 1006, CCUG 11112, CIP 108257, JCM 4345, BCRC 12073, CECT 3316, CGMCC 4.1405, IMET 43088, INA 4776, LMG 19306, NRRL ISP-5137, VKM Ac-970, VTT E-052933, CBS 464-68, IPV 1612

[Ref.: #84113]

SI-ID 13329

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces silvae sp. nov., isolated from forest soil.	Besaury L, Martinet L, Muhle E, Clermont D, Remond C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005147	2021	*
Metabolism	Biosynthetic Genes for the Tetrodecamycin Antibiotics.	Gverzdys T, Nodwell JR	J Bacteriol	10.1128/JB.00140-16	2016	*

References

#9339

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40137

#18542

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36711 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84113

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13329.1 )

#116541 Collection of Institut Pasteur ; Curators of the CIP; CIP 108257
* These data were automatically processed and therefore are not curated

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Streptomyces atroolivaceus NRRL ISP-5137

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Change proposal