Sphingomonas paucimobilis (CCUG 38025)

Name: Sphingomonas paucimobilis (CCUG 38025)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 149593

Type strain

Culture col. no. CCUG 38025

NCBI tax ID(s) 13689

Special Collections CCUG

Links

Sphingomonas paucimobilis CCUG 38025 is a bacterium that was isolated from Contaminant of cell-culture medium.

Bacteria

Name and taxonomic classification

SI-ID 57098

CCUG 38025

@ref 20215

Last LPSN update 2026-05-29 08:41:57

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingomonas

Species Sphingomonas paucimobilis

Full scientific name Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990

Synonyms (1)

Pseudomonas paucimobilis

BacDive ID	Other strains from **Sphingomonas paucimobilis** (41)	Type strain
14201	S. paucimobilis CL 1/70, DSM 1098, ATCC 29837, NCPPB 3838, ... (type strain)
14202	S. paucimobilis DSM 30198, ATCC 10829, CCM 72, CIP 104977, ...
138001	S. paucimobilis CIP 102441
141280	S. paucimobilis CCUG 573
141286	S. paucimobilis CCUG 635 A
141287	S. paucimobilis CCUG 645 A
141291	S. paucimobilis CCUG 717
141360	S. paucimobilis CCUG 1184
143453	S. paucimobilis CCUG 19310
143602	S. paucimobilis CCUG 20552
143940	S. paucimobilis CCUG 22004
143956	S. paucimobilis CCUG 22042
143957	S. paucimobilis CCUG 22051
143984	S. paucimobilis CCUG 22246
144471	S. paucimobilis CCUG 25090
145185	S. paucimobilis CCUG 27841
145186	S. paucimobilis CCUG 27842
145603	S. paucimobilis CCUG 28962
145614	S. paucimobilis CCUG 28990 A
145782	S. paucimobilis CCUG 29573
145986	S. paucimobilis CCUG 30093
146362	S. paucimobilis CCUG 31037
146637	S. paucimobilis CCUG 31690
146638	S. paucimobilis CCUG 31691
146732	S. paucimobilis CCUG 32037
146931	S. paucimobilis CCUG 32467
149656	S. paucimobilis CCUG 38134
150646	S. paucimobilis CCUG 41852 B
150651	S. paucimobilis CCUG 41858 A
150677	S. paucimobilis CCUG 41946 A
150680	S. paucimobilis CCUG 41951 A
150719	S. paucimobilis CCUG 42046 A
150725	S. paucimobilis CCUG 42077 C
151240	S. paucimobilis CCUG 43523
155549	S. paucimobilis CCUG 58102
165542	S. paucimobilis JCM 7509, GIFU 2406
165543	S. paucimobilis JCM 7515, CDC B3271, GIFU 2396, IAM 12577, ...
165545	S. paucimobilis JCM 7518, GIFU 2137
165546	S. paucimobilis JCM 7519, GIFU 11386
165548	S. paucimobilis JCM 7521, GIFU 11385
173383	S. paucimobilis CIMB142, CIMB 05-1135, CRBIP17.142

Morphology

Culture and growth conditions

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

54026

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	70.3	17.824
C16:0	12.9	16
C14:0 2OH	4.6	15.205
C17:1 ω6c	3	16.862
C16:1 ω7c	2.8	15.819
C18:1 ω5c	1.9	17.919
C18:0	0.8	18
C14:0	0.7	14
C16:1 ω5c	0.7	15.908
C19:0 CYCLO ω8c	0.7	18.9
C15:0	0.6	15
C17:0	0.5	17
C17:1 ω9c	0.3	16.773
C18:2 ω6,9c/C18:0 ANTE	0.3	17.724

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
54026	-	+	+	+	+	+	+	+	-	+	+	+	-	+	-	+	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
54026	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Laboratory	#Lab enrichment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
54026	Contaminant of cell-culture medium	1997-06-01	Umeå	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#54026	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38025
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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