Name: Streptomyces alboniger P-638
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14940

Type strain:

Species: Streptomyces alboniger

Strain Designation: P-638

Culture col. no.: DSM 40043, ATCC 12461, ATCC 19722, CBS 461.68, IFO 12738, ISP 5043, NBRC 12738, RIA 1003, JCM 4309, BCRC 11606, CECT 3270, CGMCC 4.1695, HAMBI 53, IMET 43691, JCM 4563, KCTC 9014, LMG 8577, MTCC 925, NCIMB 13007, NRRL B-1832, NRRL B-2403, NRRL ISP-5043, VKM Ac-838

Strain history: KCC S-0309 <-- Tanabe Seiyaku Co., Ltd., Japan; MCRL 0369 <-- NRRL B-2403.

NCBI tax ID(s): 132473 (species)

SI-ID 6025

LMG 8745, ICMP 322, LMG 8577, ATCC 12461, ATCC 19722, CCRC 11606, IFO 12738, IMET 43691, JCM 4309, JCM 4563, NRRL B-1832, NRRL B-2403, VKM Ac-838, NCIMB 13007, CBS 461.68, CBS 421.61, CECT 3270, KCTC 9014, AS 4.1695, NBRC 12738, BCRC 11606, HAMBI 53, CGMCC 4.1695, DSM 40043

Special Collections

Other strains from Streptomyces alboniger

Section

Streptomyces alboniger P-638 is a spore-forming bacterium that produces antibiotic compounds and was isolated from forest soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces alboniger**
	Full Scientific Name (LPSN)	Streptomyces alboniger Porter et al. 1952 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.192

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9122]	growth	28 °C
[Ref.: #18470]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.844

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #9122]	Name of produced compound	puromycin
[Ref.: #9122]	Name of produced compound	paramycin
[Ref.: #20216]	Name of produced compound	Pamamycin
[Ref.: #20216]	Name of produced compound	Puromycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18470]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18470]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18470]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18470]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18470]	mannitol ChEBI	+
[Ref.: #18470]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18470]	raffinose ChEBI	-
[Ref.: #18470]	rhamnose ChEBI	-
[Ref.: #18470]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18470]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	achromycin ChEBI	yes
[Ref.: #67770]	pamamycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18470]	55	+	+	+	+	+	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18470]	175	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9122]	Sample type/isolated from	forest soil

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999769 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	35
Soil Samples	664
Animal Samples	54
Plant Samples	49
Total Samples	802

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18470]	Biosafety level	1	German classification
[Ref.: #9122]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9122]	Streptomyces alboniger gene for 16S rRNA, partial sequence, strain: NBRC 12738	AB184111	1436	GenBank ENA	132473 tax ID
[Ref.: #20218]	Streptomyces alboniger 16S ribosomal RNA gene, partial sequence	AY845349	1484	GenBank ENA	132473 tax ID	*
[Ref.: #20218]	Streptomyces alboniger strain JCM 4309 16S ribosomal RNA gene, partial sequence	AY999769	1419	GenBank ENA	132473 tax ID	*
[Ref.: #20218]	Streptomyces anulatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4563	D44233	120	GenBank ENA	1892 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces alboniger ATCC 12461	GCA_008704395	complete	GenBank ENA	132473 tax ID	*
[Ref.: #66792]	Streptomyces alboniger strain ATCC 12461	132473.7	complete	PATRIC	132473 tax ID	*
[Ref.: #66792]	Streptomyces alboniger ATCC 12461	2563366686	draft	JGI IMG/M	132473 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces alboniger ATCC 12461 NCBI: GCA_008704395.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces alboniger ATCC 12461 NCBI: GCA_008704395.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.192	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.812	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.844	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.449	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #9122]

Culture collection no.

DSM 40043, ATCC 12461, ATCC 19722, CBS 461.68, IFO 12738, ISP 5043, NBRC 12738, RIA 1003, JCM 4309, BCRC 11606, CECT 3270, CGMCC 4.1695, HAMBI 53, IMET 43691, JCM 4563, KCTC 9014, LMG 8577, MTCC 925, NCIMB 13007, NRRL B-1832, NRRL B-2403, NRRL ISP-5043, VKM Ac-838

[Ref.: #84049]

SI-ID 6025

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Structure-activity relationship of pamamycins: effects of alkyl substituents.	Natsume M, Tazawa J, Yagi K, Abe H, Kondo S, Marumo S	J Antibiot (Tokyo)	10.7164/antibiotics.48.1159	1995	*
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*
Pathogenicity	Effect of pamamycin-607 on secondary metabolite production by Streptomyces spp.	Hashimoto M, Katsura H, Kato R, Kawaide H, Natsume M	Biosci Biotechnol Biochem	10.1271/bbb.110251	2011	*
Pathogenicity	Extracellular serine-proteinases isolated from Streptomyces alboniger: partial characterization and effect of aprotinin on cellular structure.	Lopes A, Coelho RR, Meirelles MN, Branquinha MH, Vermelho AB	Mem Inst Oswaldo Cruz	10.1590/s0074-02761999000600010	1999	*
Phylogeny	Isolation, physico-chemical properties and biological activity of pamamycin-607, an aerial mycelium-inducing substance from Streptomyces alboniger.	Kondo S, Yasui K, Natsume M, Katayama M, Marumo S	J Antibiot (Tokyo)	10.7164/antibiotics.41.1196	1988	*
Enzymology	Cloning and expression of a puromycin N-acetyl transferase gene from Streptomyces alboniger in Streptomyces lividans and Escherichia coli.	Vara J, Malpartida F, Hopwood DA, Jimenez A	Gene	10.1016/0378-1119(85)90094-0	1985	*
Enzymology	Pamamycin: a new antibiotic and stimulator of aerial mycelia formation.	McCann PA, Pogell BM	J Antibiot (Tokyo)	10.7164/antibiotics.32.673	1979	*
	Puromycin A, B and C, cryptic nucleosides identified from Streptomyces alboniger NRRL B-1832 by PPtase-based activation.	Yan X, Zhang B, Tian W, Dai Q, Zheng X, Hu K, Liu X, Deng Z, Qu X	Synth Syst Biotechnol	10.1016/j.synbio.2018.02.001	2018	*

References

#9122

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40043

#18470

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84049

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6025.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces alboniger ATCC 12461

Streptomyces alboniger ATCC 12461

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