Virgibacillus soli (DSM 22952, CCM 7714, CCUG 58580)

Name: Virgibacillus soli (DSM 22952, CCM 7714, CCUG 58580)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1494

Type strain

Strain Designation CC-YMP-6

Culture col. no. DSM 22952 CCM 7714 CCUG 58580 CC-YMP-6 CIP 110293

NCBI tax ID(s) 480284

Special Collections DSMZ CCUG Literature strains CIP

Links

Virgibacillus soli CC-YMP-6 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from soil.

spore-forming Gram-variable motile rod-shaped aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 363868

LMG 25405,CCM 7714,DSM 22952,CIP 110293,CCUG 58580

@ref 20215

Last LPSN update 2025-12-16 09:47:07

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Virgibacillus

Species Virgibacillus soli

Full scientific name Virgibacillus soli Kämpfer et al. 2011

Synonyms (1)

Paracerasibacillus soli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
23064	variable	5.0 µm	0.5 µm	rod-shaped
122670	positive			rod-shaped

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
23064	2.0-4.0 mm	orange to brownish	3 days	Caso agar (Merck 105458)
61720			1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16630	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
23064	Caso agar (Merck 105458)
23064	Nutrient agar (NA)
23064	tryptone soy agar
40337	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122670	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16630	positive	growth	28	mesophilic
23064	positive	growth	15.0-40.0
23064	negative	growth	5.0
23064	negative	growth	45.0
23064	positive	optimum	25.0-30.0	mesophilic
40337	positive	growth	30	mesophilic
61720	positive	growth	30-37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
23064	positive	optimum	7.5-8.5	alkaliphile
23064	positive	growth	7.0-10.0
23064	positive	growth	10.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
61720	aerobe
122670	facultative anaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
23064	spherical to ellipsoidal,terminal	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23064	NaCl		growth	>6.0 %(w/v)
23064	NaCl	positive	growth	0.0 %(w/v)
23064	NaCl		growth	20.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23064		casein	-	hydrolysis
23064	15824 ChEBI	D-fructose	-	builds acid from
23064	12936 ChEBI	D-galactose	-	builds acid from
23064	17634 ChEBI	D-glucose	+	builds acid from
23064	16899 ChEBI	D-mannitol	-	builds acid from
23064	16024 ChEBI	D-mannose	-	builds acid from
23064	4853 ChEBI	esculin	-	hydrolysis
23064	5291 ChEBI	gelatin	+	hydrolysis
23064	17234 ChEBI	glucose	+	carbon source
23064	506227 ChEBI	N-acetylglucosamine	-	builds acid from
23064	17632 ChEBI	nitrate	+	reduction
122670	17632 ChEBI	nitrate	+	reduction
122670	16301 ChEBI	nitrite	-	reduction
23064	28017 ChEBI	starch	+	hydrolysis
23064	17992 ChEBI	sucrose	+	carbon source
23064	27082 ChEBI	trehalose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
23064	15688 ChEBI	acetoin
23064	16136 ChEBI	hydrogen sulfide
23064	35581 ChEBI	indole
122670	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
23064	arginine dihydrolase	-	3.5.3.6
23064	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
23064	catalase	+	1.11.1.6
122670	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
23064	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
23064	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
23064	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
23064	ornithine decarboxylase	-	4.1.1.17
122670	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
23064	tryptophan deaminase	-	4.1.99.1
23064	urease	-	3.5.1.5
122670	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122670	-	+	-	-	-	+	-	-	-	+	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Sampling date
16630	soil	Yang-Ming Mountain	Taiwan, Province of China	TWN	Asia
23064							nutrient agar	2 days	30.0
61720	Soil,mountain		Taiwan, Province of China	TWN	Asia					2007
122670	Environment, Soil samples	Yang Ming mountain	Taiwan, Province of China	TWN	Asia	2007

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16630	1	Risk group (German classification) According to TRBA 466
122670	1	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16630	Virgibacillus soli strain CC-YMP-6 16S ribosomal RNA gene, partial sequence	EU213011	1526		480284
124043	Virgibacillus soli strain CCM 7714 16S ribosomal RNA gene, partial sequence.	MT760171	1404		480284

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 219. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006452	2024
	Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.	Miliotis G, Sengupta P, Hameed A, Chuvochina M, McDonagh F, Simpson AC, Parker CW, Singh NK, Rekha PD, Morris D, Raman K, Kyrpides NC, Hugenholtz P, Venkateswaran K.	mBio	10.1128/mbio.00181-24	2024
Phylogeny	Virgibacillus soli sp. nov., isolated from mountain soil.	Kampfer P, Arun AB, Busse HJ, Langer S, Young CC, Chen WM, Syed AA, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.020974-0	2010

References

#16630	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22952
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23064	P. Kämpfer,A. B. Arun,H.-J. Busse,S. Langer,C.-C. Young,W.-M. Chen,A. A. Syed,P. D. Rekha: Virgibacillus soli sp. nov., isolated from mountain soil. IJSEM 61: 275 - 280 2011 ( DOI 10.1099/ijs.0.020974-0 , PubMed 20228217 )
#40337	; Curators of the CIP;
#61720	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58580
#68382	Automatically annotated from API zym .
#122670	Collection of Institut Pasteur ; Curators of the CIP; CIP 110293
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Virgibacillus soli (DSM 22952, CCM 7714, CCUG 58580)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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