Name: Virgibacillus subterraneus H57B72
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1493

Type strain:

Species: Virgibacillus subterraneus

Strain Designation: H57B72

Culture col. no.: DSM 22441, CGMCC 1.7734

Strain history: <- X. Wang, Chinese Acad. Sci. (CAS), Beijing; H57B72

NCBI tax ID(s): 621109 (species)

SI-ID 406306

DSM 22441

Section

Virgibacillus subterraneus H57B72 is an aerobe, spore-forming, mesophilic bacterium that was isolated from subsurface saline soil.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Virgibacillus*
	Species	**Virgibacillus subterraneus**
	Full Scientific Name (LPSN)	Virgibacillus subterraneus Wang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29725]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29725]	Cell length	01-03 µm

[Ref.: #29725]	Cell width	0.1-0.3 µm

[Ref.: #29725]	Cell shape	rod-shaped

[Ref.: #29725]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.719

[Ref.: #29725]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16335]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16335]

Culture medium growth

[Ref.: #16335]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16335]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16335]	growth	30 °C
[Ref.: #29725]	growth	10-50 °C
[Ref.: #29725]	optimum	30 °C

[Ref.: #16335]	Temperature range	mesophilic
[Ref.: #29725]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29725]			optimum	7.5
[Ref.: #29725]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29725]

Oxygen tolerance

aerobe

[Ref.: #29725]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29725]		NaCl		growth	0-25	%
[Ref.: #29725]		NaCl		optimum	9	%

[Ref.: #29725]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29725]	arabinose ChEBI	+	carbon source
[Ref.: #29725]	cellobiose ChEBI	+	carbon source
[Ref.: #29725]	fructose ChEBI	+	carbon source
[Ref.: #29725]	fucose ChEBI	+	carbon source
[Ref.: #29725]	galactose ChEBI	+	carbon source
[Ref.: #29725]	glucose ChEBI	+	carbon source
[Ref.: #29725]	glycerol ChEBI	+	carbon source
[Ref.: #29725]	glycogen ChEBI	+	carbon source
[Ref.: #29725]	lactose ChEBI	+	carbon source
[Ref.: #29725]	maltose ChEBI	+	carbon source
[Ref.: #29725]	mannose ChEBI	+	carbon source
[Ref.: #29725]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29725]	nitrate ChEBI	+	reduction
[Ref.: #29725]	raffinose ChEBI	+	carbon source
[Ref.: #29725]	rhamnose ChEBI	+	carbon source
[Ref.: #29725]	ribose ChEBI	+	carbon source
[Ref.: #29725]	sorbitol ChEBI	+	carbon source
[Ref.: #29725]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29725]	catalase	+	1.11.1.6
[Ref.: #29725]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29725]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16335]	Sample type/isolated from	subsurface saline soil
[Ref.: #16335]	Geographic location (country and/or sea, region)	Qinghai Province, Qaidam basin
[Ref.: #16335]	Country	China
[Ref.: #16335]	Country ISO 3 Code	CHN
[Ref.: #16335]	Continent	Asia
[Ref.: #16335]	Geographic location	37.0639°/94.7281°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ746573 (>99% sequence identity) for Virgibacillus subterraneus from Microbeatlas

Aquatic Samples
Soil Samples	3
Animal Samples	1
Plant Samples
Total Samples	4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16335]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16335]	Virgibacillus subterraneus strain H57B72 16S ribosomal RNA gene, partial sequence	FJ746573	1481	ENA	621109 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Virgibacillus subterraneus CGMCC 1.7734	GCA_900110695	contig	GenBank	621109 tax ID	*
[Ref.: #66792]	Virgibacillus subterraneus strain CGMCC 1.7734	621109.3	wgs	PATRIC	621109 tax ID	*
[Ref.: #66792]	Virgibacillus subterraneus CGMCC 1.7734	2671180086	draft	JGI IMG/M	621109 tax ID	*

[Ref.: #16335]	GC-content	37.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29725]	GC-content	37.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Virgibacillus subterraneus strain CGMCC 1.7734 PATRIC: 621109.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Virgibacillus subterraneus strain CGMCC 1.7734 PATRIC: 621109.3
[Ref.: #69480]	gram-positive	yes	81.054	no
[Ref.: #69480]	anaerobic	no	99.082	yes
[Ref.: #69480]	halophile	yes	95.079	no
[Ref.: #69480]	spore-forming	yes	90.428	yes
[Ref.: #69480]	glucose-util	yes	88.907	yes
[Ref.: #69480]	thermophile	no	98.668	no
[Ref.: #69480]	flagellated	yes	85.909	no
[Ref.: #69480]	aerobic	yes	89.31	yes
[Ref.: #69480]	motile	yes	88.197	yes
[Ref.: #69480]	glucose-ferment	no	87.012	no

Availability in culture collections External links

[Ref.: #16335]

Culture collection no.

DSM 22441, CGMCC 1.7734

[Ref.: #71139]

SI-ID 406306

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Virgibacillus subterraneus sp. nov., a moderately halophilic Gram-positive bacterium isolated from subsurface saline soil.	Wang X, Xue Y, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.019554-0	2010	*

References

#16335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22441

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29725

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26108 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71139

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406306.1 )

#26108

IJSEM 2763 2010 ( DOI 10.1099/ijs.0.019554-0 , PubMed 20061492 )

* These data were automatically processed and therefore are not curated

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Virgibacillus subterraneus strain CGMCC 1.7734

Virgibacillus subterraneus strain CGMCC 1.7734

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