Virgibacillus xinjiangensis (DSM 19031, KCTC 13128, SL6-1)

Name: Virgibacillus xinjiangensis (DSM 19031, KCTC 13128, SL6-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1492

Type strain

Strain Designation SL6-1

Culture col. no. DSM 19031 KCTC 13128 SL6-1 CIP 108067 YIM 70112

NCBI tax ID(s) 393090

Special Collections DSMZ KCTC CIP

Links

Virgibacillus xinjiangensis SL6-1 is a mesophilic, Gram-positive, oval-shaped prokaryote that was isolated from salt lake.

Gram-positive oval-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 370253

DSM 19031,KCTC 13128,CIP 108067

@ref 20215

Last LPSN update 2025-12-16 09:47:07

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Virgibacillus

Species Virgibacillus xinjiangensis

Full scientific name Virgibacillus xinjiangensis Jeon et al. 2010

BacDive ID	Other strains from **Virgibacillus xinjiangensis** (1)	Type strain
136928	V. xinjiangensis CIP 108068, YIM 70113

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123990	positive	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7850	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37408	MEDIUM 167 - for Cytophaga uliginosa, Demetria terragena and Marinococcus al bus		Distilled water make up to (1000.000 ml);Sodium chloride (50.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (20.000 g);Yeast extract (5.000 g);Peptone (10.000 g);Tween 80 (50.000 mg);Glycerol (2.000 g);Malt extract (5.000 g);Beef extract (2.000 g);
123990	CIP Medium 167	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7850	positive	growth	30	mesophilic
37408	positive	growth	30	mesophilic
123990	positive	growth	22-37
123990	negative	growth	10
123990	negative	growth	45
123990	negative	growth	55

Culture pH

@ref	Ability	Type	PH
123990		growth	6

Physiology and metabolism

Spore formation

123990

Spore formationno

Halophily

@ref	Salt	Tested relation	Concentration
123990	NaCl	growth	0 %
123990	NaCl	growth	2 %
123990	NaCl	growth	4 %
123990	NaCl	growth	6 %
123990	NaCl	growth	8 %
123990	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123990	16947 ChEBI	citrate	-	carbon source
123990	4853 ChEBI	esculin	-	hydrolysis
123990	606565 ChEBI	hippurate	-	hydrolysis
123990	17632 ChEBI	nitrate	-	reduction
123990	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123990	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123990	15688 ChEBI	acetoin	-
123990	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
123990	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
123990	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123990	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123990	gamma-glutamyltransferase	+	2.3.2.2
123990	gelatinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123990	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123990	ornithine decarboxylase	-	4.1.1.17
123990	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123990	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123990	-	+	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7850	salt lake	Xinjiang province	China	CHN	Asia
123990	Environment, Soil, hypersaline	Xinjiang	China	CHN	Asia	2002

Taxonmaps

69479

Global distribution of 16S sequence DQ664543 (>99% sequence identity) for Virgibacillus sediminis subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	3
Animal Samples	3
Plant Samples	1
Total Samples	8

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7850	1	Risk group (German classification) According to TRBA 466
123990	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4264314v1 assembly for Virgibacillus xinjiangensis KCTC 13128	scaffold	GCA_042643145	393090	66.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7850	Virgibacillus xinjiangensis strain SL6-1 16S ribosomal RNA gene, partial sequence	DQ664543	1438		393090

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi.	Oh YJ, Jang JY, Lim SK, Kwon MS, Lee J, Kim N, Shin MY, Park HK, Seo MJ, Choi HJ	J Microbiol	10.1007/s12275-017-7386-3	2017
Phylogeny	Virgibacillus xinjiangensis sp. nov., isolated from a Salt Lake of Xin-jiang Province in China.	Jeon CO, Kim JM, Park DJ, Xu LH, Jiang CL, Kim CJ	J Microbiol	10.1007/s12275-009-0107-9	2010

References

#7850	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19031
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37408	; Curators of the CIP;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123990	Collection of Institut Pasteur ; Curators of the CIP; CIP 108067
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Virgibacillus xinjiangensis (DSM 19031, KCTC 13128, SL6-1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042643145

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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