Name: Streptomyces rubradiris DSM 40789
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14882

Type strain:

Species: Streptomyces rubradiris

Culture col. no.: DSM 40789, CBS 566.70, JCM 4955, NRRL 3061, CECT 3075, CGMCC 4.1601, IFO 14000, KCCM 12217, KCTC 9742, NBRC 14000, NCIMB 9516

Strain history: KCC S-0955 <-- DSM 40789 <-- NRRL 3061 <-- Upjohn Co., USA; UC 2630.

NCBI tax ID(s): 67255 (species)

SI-ID 49801

JCM 4955, NRRL 3061, IFO 14000, NCIMB 9516, CBS 566.70, CECT 3075, NRRL B-3061, KCTC 9742, AS 4.1601, NBRC 14000, CGMCC 4.1601, DSM 40789

Section

Streptomyces rubradiris DSM 40789 is a spore-forming, mesophilic, Gram-positive bacterium of the family Streptomycetaceae.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rubradiris**
	Full Scientific Name (LPSN)	Streptomyces rubradiris (Bhuyan et al. 1965) Komaki and Tamura 2021

Synonym

Streptomyces achromogenes subsp. rubradiris

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9797]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9797]

Culture medium growth

[Ref.: #9797]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9797]

Culture medium composition

expand / minimize

[Ref.: #9797]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9797]

Culture medium growth

[Ref.: #9797]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #9797]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9797]

Culture medium growth

[Ref.: #9797]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9797]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9797]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9797]

Name of produced compound

rubradirin

	Metabolite production	Metabolite	Production
[Ref.: #67770]		rubradirin	yes

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9797]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces achromogenes subsp. rubradiris strain KCTC 9742 16S ribosomal RNA gene, partial sequence	AY999846	1420	ENA	285531 tax ID	*
[Ref.: #20218]	Streptomyces achromogenes subsp. rubradiris gene for 16S rRNA, partial sequence, strain: NBRC 14000	AB184561	1459	ENA	285531 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces achromogenes subsp. rubradiris strain JCM 4955	285531.3	wgs	PATRIC	285531 tax ID	*
[Ref.: #66792]	Streptomyces achromogenes subsp. rubradiris strain NBRC 14000	285531.4	wgs	PATRIC	285531 tax ID	*
[Ref.: #66792]	Streptomyces achromogenes rubradiris NRRL 3061	2582581335	draft	JGI IMG/M	285531 tax ID	*
[Ref.: #66792]	Streptomyces rubradiris JCM 4955	GCA_014656255	scaffold	GenBank	285531 tax ID	*
[Ref.: #66792]	Streptomyces rubradiris NBRC 14000	GCA_016860525	contig	GenBank	285531 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces achromogenes subsp. rubradiris strain NBRC 14000 PATRIC: 285531.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces achromogenes subsp. rubradiris strain JCM 4955 PATRIC: 285531.3
[Ref.: #69480]	motile	no	93.943	no
[Ref.: #69480]	gram-positive	yes	90.736	no
[Ref.: #69480]	anaerobic	no	99.131	no
[Ref.: #69480]	halophile	no	93.219	no
[Ref.: #69480]	spore-forming	yes	96.528	no
[Ref.: #69480]	glucose-util	yes	89.478	no
[Ref.: #69480]	flagellated	no	97.978	no
[Ref.: #69480]	aerobic	yes	92.801	no
[Ref.: #69480]	thermophile	no	97.11	no
[Ref.: #69480]	glucose-ferment	no	88.934	no

Availability in culture collections External links

[Ref.: #9797]

Culture collection no.

DSM 40789, CBS 566.70, JCM 4955, NRRL 3061, CECT 3075, CGMCC 4.1601, IFO 14000, KCCM 12217, KCTC 9742, NBRC 14000, NCIMB 9516

[Ref.: #83991]

SI-ID 49801

References

#9797

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40789

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83991

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49801.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces achromogenes subsp. rubradiris strain NBRC 14000

Streptomyces achromogenes subsp. rubradiris strain JCM 4955

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