Virgibacillus olivae (DSM 18098, JCM 30551, LMG 23503)

Name: Virgibacillus olivae (DSM 18098, JCM 30551, LMG 23503)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1485

Type strain

Strain Designation E30 8, E₃₀ 8

Culture col. no. DSM 18098 JCM 30551 LMG 23503 E30 8 CECT 7163 1 more

NCBI tax ID(s) 340172

Special Collections DSMZ JCM Literature strains

History DSMZ <- T. Quesada JCM <-- DSM 18098 <-- T. Quesada; Univ. of Granada, Spain; E₃₀8.

Links

Virgibacillus olivae E30 8 is an aerobe, halotolerant, heterotroph bacterium that was isolated from Spanish green olive processing, waste water.

spore-forming Gram-positive motile rod-shaped aerobe halotolerant heterotroph 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290407

LMG 23503,DSM 18098,CECT 7163

@ref 20215

Last LPSN update 2026-05-29 08:25:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Virgibacillus

Species Virgibacillus olivae

Full scientific name Virgibacillus olivae Quesada et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
23053	positive	1.8 µm	0.26 µm	rod-shaped		peritrichous

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
23053	0.5-2.0 mm	yellow-cream	1 day	HM 5 % sea salts medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7392	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23053	HM 5 % sea salts medium

Culture temp

@ref	Growth	Type	Temperature (°C)
7392	positive	growth	30
23053	positive	growth	20.0-45.0
23053	negative	growth	15.0
23053	negative	growth	50.0
23053	positive	optimum	30.0
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
23053	positive	optimum	7.0
23053	positive	growth	4.0-8.0	acidophile
23053		growth	10.0

Physiology and metabolism

Oxygen tolerance

23053

Oxygen toleranceaerobe

Nutrition type

23053

Typeheterotroph

Spore formation

@ref	Spore description	Type of spore	Spore formation
23053	spherical or ellipsoidal,terminal or subterminal	endospore

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
23053	halotolerant	NaCl	positive	growth	0.5 %
23053		NaCl	positive	growth	20.0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23053		casein	+	hydrolysis
23053	17057 ChEBI	cellobiose	-	builds acid from
23053	17057 ChEBI	cellobiose	+	carbon source
23053	3565 ChEBI	cetrimide	-	growth
23053	16947 ChEBI	citrate	-	carbon source
23053	16947 ChEBI	citrate	-	energy source
23053	15824 ChEBI	D-fructose	+	builds acid from
23053	12936 ChEBI	D-galactose	-	builds acid from
23053	17634 ChEBI	D-glucose	-	builds acid from
23053	16899 ChEBI	D-mannitol	-	builds acid from
23053	16024 ChEBI	D-mannose	-	builds acid from
23053	65327 ChEBI	D-xylose	-	builds acid from
23053	4853 ChEBI	esculin	+	hydrolysis
23053	5291 ChEBI	gelatin	+	hydrolysis
23053	17234 ChEBI	glucose	-	fermentation
23053	17234 ChEBI	glucose	+	carbon source
23053	62345 ChEBI	L-rhamnose	-	builds acid from
23053	37684 ChEBI	mannose	+	carbon source
23053	17268 ChEBI	myo-inositol	-	builds acid from
23053	17632 ChEBI	nitrate	+	reduction
23053	16301 ChEBI	nitrite	+	reduction
23053	26546 ChEBI	rhamnose	+	carbon source
23053	15963 ChEBI	ribitol	-	builds acid from
23053	28017 ChEBI	starch	+	hydrolysis
23053	17992 ChEBI	sucrose	-	builds acid from
23053	27897 ChEBI	tryptophan	-	energy source
23053	53424 ChEBI	tween 20	-	hydrolysis
23053	53423 ChEBI	tween 40	-	hydrolysis
23053	53426 ChEBI	tween 80	-	hydrolysis
23053	18186 ChEBI	tyrosine	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
23053	2637	amikacin
23053	28971	ampicillin
23053	124991	cefalotin
23053	3745	clindamycin
23053	48923	erythromycin
23053	17833	gentamicin
23053	6104	kanamycin
23053	100147	nalidixic acid
23053	17334	penicillin
23053	8309	polymyxin b
23053	28077	rifampicin
23053	17076	streptomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
23053	15688 ChEBI	acetoin
23053	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
23053	15688 ChEBI	acetoin	-
23053	17234 ChEBI	glucose		-
23053	35581 ChEBI	indole			-

Enzymes

@ref	Value	Activity	Ec
23053	catalase	+	1.11.1.6
23053	cytochrome oxidase	+	1.9.3.1
23053	tryptophan deaminase	-	4.1.99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	-
#Engineered	#Waste	#Wastewater
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture
7392	Spanish green olive processing, waste water	La Roda, Sevilla	Spain	ESP	Europe
23053						HM medium
67770	Wastewater of Spanish green olive processing	La Roda de Andalucia	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence DQ139839 (>99% sequence identity) for Virgibacillus from Microbeatlas

Aquatic Samples	31
Soil Samples	22
Animal Samples	63
Plant Samples	5
Total Samples	121

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7392	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7392	Virgibacillus olivae strain E308 16S ribosomal RNA gene, partial sequence	DQ139839	1564		340172

GC content

@ref	GC-content (mol%)	Method
7392	33.4
67770	33.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Virgibacillus kapii sp. nov., isolated from Thai shrimp paste (Ka-pi).	Daroonpunt R, Tanasupawat S, Kudo T, Ohkuma M, Itoh T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000951	2016
Phylogeny	Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives.	Quesada T, Aguilera M, Morillo JA, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.64550-0	2007

References

#7392	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18098
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23053	Teresa Quesada,Margarita Aguilera,José Antonio Morillo,Alberto Ramos-Cormenzana,Mercedes Monteoliva-Sánchez: Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives. IJSEM 57: 906 - 910 2007 ( DOI 10.1099/ijs.0.64550-0 , PubMed 17473231 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Virgibacillus olivae (DSM 18098, JCM 30551, LMG 23503)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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