Streptococcus dysgalactiae subsp. equisimilis DSM 23147 is a microaerophile, Gram-positive, coccus-shaped human pathogen that was isolated from isolate .
Gram-positive coccus-shaped microaerophile human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
|
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus dysgalactiae subsp. equisimilis |
| Full scientific name Streptococcus dysgalactiae subsp. equisimilis Vandamme et al. 1996 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 16731 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 16731 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 38533 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 118986 | CIP Medium 72 | Medium recipe at CIP | |||
| 118986 | CIP Medium 29 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 118986 | NaCl | growth | 6.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68381 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32STR |
| 68370 | 29016 ChEBI | arginine | + | hydrolysis | from API 20STR |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68370 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20STR |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68370 | 16988 ChEBI | D-ribose | + | builds acid from | from API 20STR |
| 68381 | 16988 ChEBI | D-ribose | + | builds acid from | from API rID32STR |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68370 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 20STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 118986 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68370 | 4853 ChEBI | esculin | + | hydrolysis | from API 20STR |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 118986 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68370 | 606565 ChEBI | hippurate | - | hydrolysis | from API 20STR |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68370 | 15443 ChEBI | inulin | - | builds acid from | from API 20STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68370 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20STR |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68370 | 17716 ChEBI | lactose | - | builds acid from | from API 20STR |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 118986 | 17632 ChEBI | nitrate | - | reduction | |
| 118986 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68381 | 27941 ChEBI | pullulan | + | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | + | builds acid from | from API rID32STR |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68370 | 16634 ChEBI | raffinose | - | builds acid from | from API 20STR |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68370 | 28017 ChEBI | starch | + | builds acid from | from API 20STR |
| 68381 | 17992 ChEBI | sucrose | - | builds acid from | from API rID32STR |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68370 | 27082 ChEBI | trehalose | + | builds acid from | from API 20STR |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 118986 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68370 | alkaline phosphatase | + | 3.1.3.1 | from API 20STR |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68370 | alpha-galactosidase | - | 3.2.1.22 | from API 20STR |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | + | 3.5.3.6 | from API rID32STR |
| 68370 | arginine dihydrolase | + | 3.5.3.6 | from API 20STR |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118986 | beta-galactosidase | + | 3.2.1.23 | |
| 68370 | beta-galactosidase | - | 3.2.1.23 | from API 20STR |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68370 | beta-glucosidase | + | 3.2.1.21 | from API 20STR |
| 68381 | beta-glucuronidase | + | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 68370 | beta-glucuronidase | + | 3.2.1.31 | from API 20STR |
| 68381 | beta-mannosidase | + | 3.2.1.25 | from API rID32STR |
| 16731 | catalase | - | 1.11.1.6 | |
| 118986 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 16731 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118986 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68370 | leucine arylamidase | + | 3.4.11.1 | from API 20STR |
| 68382 | lipase (C 14) | - | from API zym | |
| 118986 | lysine decarboxylase | - | 4.1.1.18 | |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118986 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118986 | oxidase | - | ||
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68370 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API 20STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118986 | urease | - | 3.5.1.5 | |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 68382 | valine arylamidase | + | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 65618 | ||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118986 | not determinedn.d. | +/- | - | - | - | +/- | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | +/- | - | - | - | +/- | - | +/- | - | - | + | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | +/- |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16731 | + | - | + | + | - | + | + | - | - | - | + | + | - | - | - | - | - | + | - | - | - | + | - | - | + | + | - | - | + | - | + | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1612813v1 assembly for Streptococcus dysgalactiae FDAARGOS_1016 | complete | 1334 | 98.18 | ||||
| 66792 | ASM3081281v1 assembly for Streptococcus dysgalactiae DSM 23147 | contig | 1334 | 69.45 | ||||
| 66792 | ASM21457v2 assembly for Streptococcus dysgalactiae subsp. equisimilis SK1249 | contig | 1000589 | 5.01 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptococcus dysgalactiae subsp. equisimilis strain CIP 105120 16S ribosomal RNA gene, partial sequence | DQ235084 | 448 | 119602 | ||
| 20218 | Streptococcus dysgalactiae subsp. equisimilis strain CCUG 36637 16S ribosomal RNA gene, partial sequence | JN639432 | 1262 | 119602 | ||
| 16731 | Streptococcus dysgalactiae subsp. equisimilis strain CIP 105120 16S ribosomal RNA gene, partial sequence | DQ232540 | 1487 | 119602 | ||
| 124043 | Streptococcus dysgalactiae gene for 16S rRNA. | AB008926 | 1321 | 119602 | ||
| 124043 | Streptococcus dysgalactiae subsp. equisimilis strain DSM 23147 16S ribosomal RNA gene, partial sequence. | KP001336 | 689 | 119602 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 62.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 67.20 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 84.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 86.56 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 88.28 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 84.80 | no |
| 125438 | aerobic | aerobicⓘ | no | 95.89 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.91 | no |
| 125438 | flagellated | motile2+ⓘ | no | 90.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Species identification by MALDI-TOF MS and gap PCR-RFLP of non-aureus Staphylococcus, Mammaliicoccus, and Streptococcus spp. associated with sheep and goat mastitis. | Rosa NM, Penati M, Fusar-Poli S, Addis MF, Tola S. | Vet Res | 10.1186/s13567-022-01102-4 | 2022 | ||
| Current Challenges of Streptococcus Infection and Effective Molecular, Cellular, and Environmental Control Methods in Aquaculture. | Mishra A, Nam GH, Gim JA, Lee HE, Jo A, Kim HS. | Mol Cells | 10.14348/molcells.2018.2154 | 2018 | ||
| Phylogeny | Isolation and phylogenetic characterization of Streptococcus halichoeri from a European badger (Meles meles) with pyogranulomatous pleuropneumonia. | Moreno B, Bolea R, Morales M, Martin-Burriel I, Gonzalez Ch, Badiola JJ. | J Comp Pathol | 10.1016/j.jcpa.2014.12.012 | 2015 | |
| Phylogeny | Characterization of blood culture isolates of Streptococcus dysgalactiae subsp. equisimilis possessing Lancefield's group A antigen. | Brandt CM, Haase G, Schnitzler N, Zbinden R, Lutticken R. | J Clin Microbiol | 10.1128/jcm.37.12.4194-4197.1999 | 1999 | |
| Comparison of Characteristics of Streptococcus dysgalactiae subsp. equisimilis Isolates Causing Repetitive vs Single Infections. | Fujita T, Yoshida H, Osaka S, Hirose Y, Goto M, Nagano N, Takahashi T. | Ann Lab Med | 10.3343/alm.2019.39.5.488 | 2019 | ||
| Pathogenicity | Molecular Epidemiological Features and Antibiotic Susceptibility Patterns of Streptococcus dysgalactiae subsp. equisimilis Isolates from Korea and Japan. | Kim S, Byun JH, Park H, Lee J, Lee HS, Yoshida H, Shibayama A, Fujita T, Tsuyuki Y, Takahashi T. | Ann Lab Med | 10.3343/alm.2018.38.3.212 | 2018 | |
| Genetics | Prevalence of Complement-Mediated Cell Lysis-like Gene (sicG) in Streptococcus dysgalactiae subsp. equisimilis Isolates From Japan (2014-2016). | Takahashi T, Fujita T, Shibayama A, Tsuyuki Y, Yoshida H. | Ann Lab Med | 10.3343/alm.2017.37.4.297 | 2017 |
| #16731 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23147 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38533 | ; Curators of the CIP; |
| #65618 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36637 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68370 | Automatically annotated from API 20STR . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #118986 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105120 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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