Streptococcus vestibularis MM1 is a microaerophile, coccus-shaped bacterium that was isolated from vestibular mucosa of human oral cavity.
coccus-shaped microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus vestibularis |
| Full scientific name Streptococcus vestibularis Whiley and Hardie 1988 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2142 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 2142 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 35542 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 123830 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.882 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 123830 | NaCl | growth | 6.5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 2142 | A11.05 | A3alpha L-Lys-L-Ala2 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 123830 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68381 | 17716 ChEBI | lactose | + | builds acid from | from API rID32STR |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 123830 | 17632 ChEBI | nitrate | - | reduction | |
| 123830 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68381 | 27082 ChEBI | trehalose | - | builds acid from | from API rID32STR |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68381 | 16199 ChEBI | urea | + | hydrolysis | from API rID32STR |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 123830 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68381 | beta-galactosidase | + | 3.2.1.23 | from API rID32STR |
| 123830 | beta-galactosidase | + | 3.2.1.23 | |
| 68381 | beta-glucosidase | + | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 2142 | catalase | - | 1.11.1.6 | |
| 123830 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 2142 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 123830 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 123830 | lysine decarboxylase | - | 4.1.1.18 | |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 123830 | ornithine decarboxylase | - | 4.1.1.17 | |
| 123830 | oxidase | - | ||
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68381 | urease | + | 3.5.1.5 | from API rID32STR |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||
| @ref | 48083 | |||||||||||||||||||||||||||||||||||||||
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| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123830 | not determinedn.d. | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | +/- | + | + | + | + | + | + | + | + | - | + | - | - | - | + | + | - | - | + | + | - | - | - | - | - | - | - | - | - |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2142 | - | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - | + | + | + | - | - | + | - | - | - | + | - | - | - | - | - | + | |
| 2142 | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | + | - | - | - | - | - | + | |
| 2142 | - | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - | + | + | + | - | - | + | - | - | - | + | - | - | + | - | - | + | |
| 2142 | - | + | + | - | - | + | - | - | - | + | - | - | + | - | - | - | + | + | + | - | - | - | + | - | - | + | - | - | - | - | - | + |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 2142 | vestibular mucosa of human oral cavity | Homo sapiens | United Kingdom | GBR | Europe | ||
| 48083 | Human oral cavity,vestibular mucosa | Homo sapiens | London | United Kingdom | GBR | Europe | |
| 67771 | From vestibular mucosa of human oral cavity | Homo sapiens | United Kingdom | GBR | Europe | ||
| 123830 | Human, Oral cavity | Homo sapiens | London | United Kingdom | GBR | Europe |
Global distribution of 16S sequence AY188353 (>99% sequence identity) for Streptococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM18829v1 assembly for Streptococcus vestibularis ATCC 49124 | scaffold | 889206 | 57.31 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptococcus vestibularis strain NCTC 12166 16S-23S ribosomal RNA intergenic spacer, partial sequence | EU860352 | 350 | 889206 | ||
| 20218 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | JN181394 | 537 | 889206 | ||
| 20218 | S.vestibularis 16S rRNA | X58321 | 1332 | 889206 | ||
| 2142 | Streptococcus vestibularis strain ATCC 49124 16S ribosomal RNA gene, complete sequence | AY188353 | 1538 | 889206 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181323 | 583 | 76860 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181324 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181325 | 537 | 1304 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181326 | 583 | 76860 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181327 | 511 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181328 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181329 | 537 | 1304 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181330 | 514 | 1318 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181331 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181332 | 511 | 1302 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181333 | 537 | 1343 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181334 | 537 | 1304 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181335 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181336 | 645 | 1328 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181337 | 506 | 113107 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181338 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181339 | 552 | 119602 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181340 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181341 | 583 | 76860 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181342 | 583 | 76860 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181343 | 513 | 1302 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181344 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181345 | 513 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181346 | 511 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181347 | 583 | 76860 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181348 | 511 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181349 | 511 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181350 | 655 | 1338 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181351 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181352 | 495 | 102684 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181353 | 537 | 1304 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181354 | 512 | 1302 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181355 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181356 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181357 | 537 | 1343 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181358 | 347 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181359 | 242 | 1318 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181360 | 537 | 1304 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181361 | 518 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181362 | 512 | 1302 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181363 | 509 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181364 | 514 | 1318 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181365 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181366 | 511 | 68892 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181367 | 513 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181368 | 513 | 1302 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181369 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181370 | 657 | 1328 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181371 | 511 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181372 | 512 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181373 | 511 | 1303 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181374 | 528 | 1305 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181375 | 513 | 1318 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181376 | 537 | 1343 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181377 | 510 | 28037 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181378 | 655 | 1328 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181379 | 655 | 1000570 | ||
| 124043 | Streptococcus vestibularis ATCC 49124 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | JN181385 | 496 | 889204 | ||
| 124043 | Streptococcus vestibularis strain CCUG 24893 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence. | DQ204553 | 363 | 1343 |
| 2142 | GC-content (mol%)39.0 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 96.26 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 80.66 | no |
| 125439 | motility | BacteriaNetⓘ | no | 91.62 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.88 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.18 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 88.40 | yes |
| 125438 | aerobic | aerobicⓘ | no | 98.73 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.28 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Isolation and Characterization of a Bacteriocin-Like Substance Produced by Geobacillus toebii Strain HBB-247. | Basbulbul Ozdemir G, Biyik HH. | Indian J Microbiol | 10.1007/s12088-011-0227-x | 2012 | |
| Metabolism | Metagenome-wide association of gut microbiome features for schizophrenia. | Zhu F, Ju Y, Wang W, Wang Q, Guo R, Ma Q, Sun Q, Fan Y, Xie Y, Yang Z, Jie Z, Zhao B, Xiao L, Yang L, Zhang T, Feng J, Guo L, He X, Chen Y, Chen C, Gao C, Xu X, Yang H, Wang J, Dang Y, Madsen L, Brix S, Kristiansen K, Jia H, Ma X. | Nat Commun | 10.1038/s41467-020-15457-9 | 2020 | |
| Introducing a bioelectrochemical method for highly selective enumeration of magnetotactic bacteria. | Memarpoor-Yazdi M, Haghighatian S, Doroodmand MM, Derakhshandeh A, Moezzi MS. | Sci Rep | 10.1038/s41598-020-65499-8 | 2020 | ||
| Pathogenicity | Hidden Role of Gut Microbiome Dysbiosis in Schizophrenia: Antipsychotics or Psychobiotics as Therapeutics? | Munawar N, Ahsan K, Muhammad K, Ahmad A, Anwar MA, Shah I, Al Ameri AK, Al Mughairbi F. | Int J Mol Sci | 10.3390/ijms22147671 | 2021 | |
| Modulation of Gut Microbial Diversity through Non-Pharmaceutical Approaches to Treat Schizophrenia. | Munawar N, Ahmad A, Anwar MA, Muhammad K. | Int J Mol Sci | 10.3390/ijms23052625 | 2022 | ||
| Transcriptome | Gene expression of bacterial collagenolytic proteases in root caries. | Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T. | J Oral Microbiol | 10.1080/20002297.2018.1424475 | 2018 | |
| Phylogeny | Evolutionary relationships among salivarius streptococci as inferred from multilocus phylogenies based on 16S rRNA-encoding, recA, secA, and secY gene sequences. | Pombert JF, Sistek V, Boissinot M, Frenette M. | BMC Microbiol | 10.1186/1471-2180-9-232 | 2009 | |
| Genetics | Bacteriocin Producing Streptococcus agalactiae Strains Isolated from Bovine Mastitis in Brazil. | Vidal Amaral JR, Juca Ramos RT, Almeida Araujo F, Bentes Kato R, Figueira Aburjaile F, de Castro Soares S, Goes-Neto A, Matiuzzi da Costa M, Azevedo V, Brenig B, Soares de Oliveira S, Soares Rosado A. | Microorganisms | 10.3390/microorganisms10030588 | 2022 | |
| An effective strategy, applicable to Streptococcus salivarius and related bacteria, to enhance or confer electroporation competence. | Buckley ND, Vadeboncoeur C, LeBlanc DJ, Lee LN, Frenette M. | Appl Environ Microbiol | 10.1128/aem.65.9.3800-3804.1999 | 1999 | ||
| Enzymology | Distribution of proteins similar to IIIManH and IIIManL of the Streptococcus salivarius phosphoenolpyruvate:mannose-glucose phosphotransferase system among oral and nonoral bacteria. | Pelletier M, Frenette M, Vadeboncoeur C. | J Bacteriol | 10.1128/jb.177.9.2270-2275.1995 | 1995 | |
| Phylogeny | Multilocus sequence typing of Streptococcus thermophilus from naturally fermented dairy foods in China and Mongolia. | Yu J, Sun Z, Liu W, Xi X, Song Y, Xu H, Lv Q, Bao Q, Menghe B, Sun T. | BMC Microbiol | 10.1186/s12866-015-0551-0 | 2015 | |
| Enzymology | pH gradient and distribution of streptococci, lactobacilli, prevotellae, and fusobacteria in carious dentine. | Kianoush N, Nguyen KA, Browne GV, Simonian M, Hunter N. | Clin Oral Investig | 10.1007/s00784-013-1009-0 | 2014 | |
| Phylogeny | Serotyping of Streptococcus pneumoniae based on capsular genes polymorphisms. | Raymond F, Boucher N, Allary R, Robitaille L, Lefebvre B, Tremblay C, Corbeil J, Gervaix A. | PLoS One | 10.1371/journal.pone.0076197 | 2013 | |
| Metabolism | Salivaricin D, a novel intrinsically trypsin-resistant lantibiotic from Streptococcus salivarius 5M6c isolated from a healthy infant. | Birri DJ, Brede DA, Nes IF. | Appl Environ Microbiol | 10.1128/aem.06588-11 | 2012 | |
| Streptococcus salivarius fimbriae are composed of a glycoprotein containing a repeated motif assembled into a filamentous nondissociable structure. | Levesque C, Vadeboncoeur C, Chandad F, Frenette M. | J Bacteriol | 10.1128/jb.183.9.2724-2732.2001 | 2001 | ||
| Metabolism | Live and let die: Hydrogen peroxide production by the commensal flora and its role in maintaining a symbiotic microbiome. | Redanz S, Cheng X, Giacaman RA, Pfeifer CS, Merritt J, Kreth J. | Mol Oral Microbiol | 10.1111/omi.12231 | 2018 | |
| Phylogeny | Molecular characterization of subject-specific oral microflora during initial colonization of enamel. | Diaz PI, Chalmers NI, Rickard AH, Kong C, Milburn CL, Palmer RJ, Kolenbrander PE. | Appl Environ Microbiol | 10.1128/aem.72.4.2837-2848.2006 | 2006 | |
| Phylogeny | Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. | Tung SK, Teng LJ, Vaneechoutte M, Chen HM, Chang TC. | J Clin Microbiol | 10.1128/jcm.01712-06 | 2006 | |
| Pathogenicity | Human oral lectin ZG16B acts as a cell wall polysaccharide probe to decode host-microbe interactions with oral commensals. | Ghosh S, Ahearn CP, Isabella CR, Marando VM, Dodge GJ, Bartlett H, McPherson RL, Dugan AE, Jain S, Neznanova L, Tettelin H, Putnik R, Grimes CL, Ruhl S, Kiessling LL, Imperiali B. | Proc Natl Acad Sci U S A | 10.1073/pnas.2216304120 | 2023 | |
| Metabolism | Ability to bind salivary alpha-amylase discriminates certain viridans group streptococcal species. | Kilian M, Nyvad B. | J Clin Microbiol | 10.1128/jcm.28.11.2576-2577.1990 | 1990 | |
| Phylogeny | Extent of horizontal gene transfer in evolution of Streptococci of the salivarius group. | Delorme C, Poyart C, Ehrlich SD, Renault P. | J Bacteriol | 10.1128/jb.01058-06 | 2007 | |
| Phylogeny | Description and evaluation of the semiautomated 4-hour rapid ID 32 Strep method for identification of streptococci and members of related genera. | Freney J, Bland S, Etienne J, Desmonceaux M, Boeufgras JM, Fleurette J. | J Clin Microbiol | 10.1128/jcm.30.10.2657-2661.1992 | 1992 | |
| Phylogeny | Comparison of phenotypic characteristics, DNA-DNA hybridization results, and results with a commercial rapid biochemical and enzymatic reaction system for identification of viridans group streptococci. | Kikuchi K, Enari T, Totsuka K, Shimizu K. | J Clin Microbiol | 10.1128/jcm.33.5.1215-1222.1995 | 1995 | |
| Phylogeny | Streptococcus raffinosi sp. nov., isolated from human breast milk samples. | Nguyen HV, Trinh ATV, Bui LNH, Hoang ATL, Tran QTL, Trinh TT. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006442 | 2024 |
| #2142 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5636 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #35542 | ; Curators of the CIP; |
| #48083 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24893 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123830 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103363 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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