Name: Streptococcus parasanguinis SS 898
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14792

Type strain:

Species: Streptococcus parasanguinis

Strain Designation: SS 898

Culture col. no.: CCUG 30417, LMG 14537, KCTC 15406, DSM 6778, ATCC 15912, CIP 13046, CIP 104372, KCTC 13046

Strain history: CIP <- 1995, DSM <- ATCC <- C.K. Williamson, Streptococcus mitis

NCBI tax ID(s): 760570 (strain), 1318 (species)

SI-ID 8050

LMG 14537, ATCC 15912, CCUG 30417, DSM 6778, CIP 104372, BCRC 14739, CCRC 14739, CIP 13046, CNCTC 7136

Special Collections

Other strains from Streptococcus parasanguinis

Section

When using BacDive for research please cite our paper

Streptococcus parasanguinis SS 898 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human throat.

Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus parasanguinis**
	Full Scientific Name (LPSN)	Streptococcus parasanguinis corrig. Whiley et al. 1990

Synonym

Streptococcus parasanguis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %93.1

[Ref.: #125439]	Motility	no Confidence in %91.2
[Ref.: #125438]	Motility	no Confidence in %90.5

[Ref.: #2812]	Type of hemolysis	alpha
[Ref.: #2812]	Hemolysis ability	1
[Ref.: #2812]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2812]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #2812]

Culture medium growth

[Ref.: #2812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2812]

Culture medium composition

expand / minimize

[Ref.: #2812]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #2812]

Culture medium growth

[Ref.: #2812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2812]

Culture medium composition

expand / minimize

[Ref.: #34689]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #34689]

Culture medium growth

[Ref.: #34689]

Culture medium composition

expand / minimize

[Ref.: #121590]

Culture medium

CIP Medium 6

[Ref.: #121590]

Culture medium growth

[Ref.: #121590]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2812]	growth	37 °C
[Ref.: #34689]	growth	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2812]	Oxygen tolerance	microaerophile
[Ref.: #67771]	Oxygen tolerance	microaerophile
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %98.6

[Ref.: #125439]

Ability of spore formation

no Confidence in %96.3

[Ref.: #2812]	Murein short key	A11.50
[Ref.: #2812]	Murein types	A3alpha L-Lys-L-Ala-Gly

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	-	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	+	3.1.3.1	* from API rID32STR
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #2812]	catalase	+	1.11.1.6
[Ref.: #2812]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #2812]	11562	+	+	+	-	+	+	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	-	-	-	+	-	-	+	+	+	-
[Ref.: #2812]	10984	-	+	+	-	+	+	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	-	+	-	-	+	-	-	-	+	-	-
[Ref.: #2812]	10983	-	+	+	-	+	+	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-
[Ref.: #2812]	11734	+	+	+	-	+	+	-	-	-	+	+	+	+	-	-	-	-	+	+	-	+	+	-	-	-	+	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2812]	Sample type/isolated from	human throat

[Ref.: #50067]	Sample type/isolated from	Human throat

[Ref.: #67771]	Sample type/isolated from	From Human throat

[Ref.: #121590]	Sample type/isolated from	Human, Throat
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY485605 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	182
Soil Samples	43
Animal Samples	10697
Plant Samples	135
Total Samples	11057

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2812]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121590]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequence	DQ303191	1464	GenBank ENA	760570 tax ID	*
[Ref.: #20218]	Streptococcus parasanguinis strain ATCC 15912 16S ribosomal RNA gene, partial sequence	EU156771	1329	GenBank ENA	760570 tax ID	*
[Ref.: #124043]	Streptococcus parasanguinis strain KCTC 13046 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.	HM241935	460	GenBank ENA	1318 tax ID	*
[Ref.: #20218]	Streptococcus parasanguis 16S ribosomal RNA gene, complete sequence	AF003933	1513	GenBank ENA	760570 tax ID	*
[Ref.: #20218]	Streptococcus parasanguinis strain ATCC 15912 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY351320	249	GenBank ENA	760570 tax ID	*
[Ref.: #20218]	Streptococcus parasanguinis strain ATCC 15912 16S small subunit ribosomal RNA gene, partial sequence	AY485605	1470	GenBank ENA	760570 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus parasanguinis ATCC 15912	GCA_000164675	complete	GenBank ENA	760570 tax ID	*
[Ref.: #66792]	Streptococcus parasanguinis ATCC 15912	760570.3	wgs	PATRIC	760570 tax ID	*
[Ref.: #66792]	Streptococcus parasanguinis ATCC 15912	650716089	complete	JGI IMG/M	760570 tax ID	*

[Ref.: #2812]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	42.0 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptococcus parasanguinis ATCC 15912 ATCC 15912 NCBI: GCA_000164675.2
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.747	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	90.67	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	96.556	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	82.603	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.278	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptococcus parasanguinis ATCC 15912 IMG: 650716089
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	96.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	91.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	93.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	98.6

Availability in culture collections External links

[Ref.: #2812]

Culture collection no.

CCUG 30417, LMG 14537, KCTC 15406, DSM 6778, ATCC 15912, CIP 13046, CIP 104372, KCTC 13046

[Ref.: #83909]

SI-ID 8050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus xiaochunlingii sp. nov. E24 Isolated From the Oropharynx of Healthy Chinese Children.	Zou Y, Sun Y, Qi H, Liu D, Tian H, Wang N, Li X	Front Microbiol	10.3389/fmicb.2020.563213	2020	*
Phylogeny	Streptococcus koreensis sp. nov., Isolated from Human Subgingival Dental Plaque of Periodontitis Lesion.	Lim YK, Park SN, Shin JH, Ji S, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01778-6	2019	*
Phylogeny	Streptococcusmarmotae sp. nov., isolated from the respiratory tract of Marmota himalayana.	Niu L, Lu S, Hu S, Jin D, Lai X, Yang J, Chen C, Wang Y, Wang Y, Bai X, Lan R, Lv G, Xie Y, Ye C, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001350	2016	*
Phylogeny	Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens.	Whiley RA, Fraser HY, Douglas CW, Hardie JM, Williams AM, Collins MD	FEMS Microbiol Lett	10.1111/j.1574-6968.1990.tb04133.x	1990	*

References

#2812

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6778

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34689 ; Curators of the CIP;
#50067 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30417

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83909

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8050.1 )

#121590 Collection of Institut Pasteur ; Curators of the CIP; CIP 104372

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptococcus parasanguinis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Streptococcus parasanguinis ATCC 15912 ATCC 15912

Streptococcus parasanguinis ATCC 15912

Change proposal

Change proposal